Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29141 | 5' | -56.7 | NC_006146.1 | + | 54465 | 0.68 | 0.846267 |
Target: 5'- gCGaaCCGCGUCCAUGaUCCUcagGAugGCGUCg -3' miRNA: 3'- gGC--GGCGCAGGUGC-AGGGa--CU--UGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 52645 | 0.68 | 0.845484 |
Target: 5'- gCCGCUcuggcgcaugaggGCGUCCAgccucgcccccuCGUCCa-GGACAUCg -3' miRNA: 3'- -GGCGG-------------CGCAGGU------------GCAGGgaCUUGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 47840 | 0.68 | 0.838354 |
Target: 5'- gCC-CCGCaggaCGCGUCCCUGGacccgGCGUCu -3' miRNA: 3'- -GGcGGCGcag-GUGCAGGGACU-----UGUAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 50539 | 0.68 | 0.821999 |
Target: 5'- -aGCCGC-UCCAgGUCCCgggUGGGCAc- -3' miRNA: 3'- ggCGGCGcAGGUgCAGGG---ACUUGUag -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 63330 | 0.68 | 0.821163 |
Target: 5'- aCCGCCGUGgcgguguauuucuUCCACGaagCCCUGGGa--- -3' miRNA: 3'- -GGCGGCGC-------------AGGUGCa--GGGACUUguag -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 136546 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 12332 | 0.68 | 0.81357 |
Target: 5'- cCCGCCucaGUCCccuCGcCCCUGGGCcUCa -3' miRNA: 3'- -GGCGGcg-CAGGu--GCaGGGACUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135802 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137568 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137196 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137382 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 137475 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135524 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135895 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 136081 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135988 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135431 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135338 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135152 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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29141 | 5' | -56.7 | NC_006146.1 | + | 135245 | 0.68 | 0.81357 |
Target: 5'- gCUGCCGgGUCCGCugcccgGUCCUgGAGC-UCg -3' miRNA: 3'- -GGCGGCgCAGGUG------CAGGGaCUUGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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