Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 147173 | 0.66 | 0.805505 |
Target: 5'- cGGCGgcGCaGACCGgcgccccuucgcCCGGUgCGCAGa -3' miRNA: 3'- cCCGCauCGaCUGGC------------GGUCGaGCGUC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 156584 | 0.66 | 0.805505 |
Target: 5'- -uGCGUgaguucuccAGCagGugCGCCAGCUC-CAGg -3' miRNA: 3'- ccCGCA---------UCGa-CugGCGGUCGAGcGUC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 62382 | 0.66 | 0.796815 |
Target: 5'- aGGCcc--CUGGCCGuUCAGCUCGCGa -3' miRNA: 3'- cCCGcaucGACUGGC-GGUCGAGCGUc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 51691 | 0.66 | 0.796815 |
Target: 5'- gGGGCGggGGCUGAUCGuCCuccGUgUCGguGg -3' miRNA: 3'- -CCCGCa-UCGACUGGC-GGu--CG-AGCguC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 56367 | 0.66 | 0.795939 |
Target: 5'- aGGCGUGGUggcgGagcaccGCCGCCGgguaagcguggccGCUCGCGa -3' miRNA: 3'- cCCGCAUCGa---C------UGGCGGU-------------CGAGCGUc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 115368 | 0.66 | 0.79506 |
Target: 5'- cGGCGUGGCggcggagcuggaGGCCcugGCC-GCUCGCGu -3' miRNA: 3'- cCCGCAUCGa-----------CUGG---CGGuCGAGCGUc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 19141 | 0.66 | 0.787985 |
Target: 5'- aGGCGcaaGGCUGACgggGCCAGCgugUGCGu -3' miRNA: 3'- cCCGCa--UCGACUGg--CGGUCGa--GCGUc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 170598 | 0.66 | 0.787985 |
Target: 5'- uGGGCGUGGCgaGCgCGCCgGGCcCGCc- -3' miRNA: 3'- -CCCGCAUCGacUG-GCGG-UCGaGCGuc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 11532 | 0.66 | 0.787985 |
Target: 5'- -uGCG-AGCUGGCgGUCAGCUaCGCc- -3' miRNA: 3'- ccCGCaUCGACUGgCGGUCGA-GCGuc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 123923 | 0.66 | 0.787095 |
Target: 5'- cGGGCGcaauuccUGGCggcGGCCggGCCGGCgaaauaCGCGGg -3' miRNA: 3'- -CCCGC-------AUCGa--CUGG--CGGUCGa-----GCGUC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 64252 | 0.66 | 0.779023 |
Target: 5'- aGGaCGgccCUGACCaGCCGGC-CGCAGc -3' miRNA: 3'- cCC-GCaucGACUGG-CGGUCGaGCGUC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 33970 | 0.66 | 0.779023 |
Target: 5'- uGGGCGUGguccGCUGGguCCGCUGGUcCGguGc -3' miRNA: 3'- -CCCGCAU----CGACU--GGCGGUCGaGCguC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 56856 | 0.66 | 0.773585 |
Target: 5'- gGGGCGgcagcuuuggcuggGGCUGGCgGCCcccguGUUCGgGGa -3' miRNA: 3'- -CCCGCa-------------UCGACUGgCGGu----CGAGCgUC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 102877 | 0.66 | 0.769935 |
Target: 5'- uGGuCGUGGCcgGGCC-CCAGUUUGCGc -3' miRNA: 3'- cCC-GCAUCGa-CUGGcGGUCGAGCGUc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 65022 | 0.66 | 0.769935 |
Target: 5'- aGGgGgcGCUGGCCGCUAuCUUGCc- -3' miRNA: 3'- cCCgCauCGACUGGCGGUcGAGCGuc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 54883 | 0.66 | 0.769935 |
Target: 5'- cGGGCGUAGCgGG--GUCcGCUCGCGc -3' miRNA: 3'- -CCCGCAUCGaCUggCGGuCGAGCGUc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 41144 | 0.66 | 0.769935 |
Target: 5'- gGGGCGUGcGCUGACUcUguGCaauaUCGCAa -3' miRNA: 3'- -CCCGCAU-CGACUGGcGguCG----AGCGUc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 57144 | 0.66 | 0.769935 |
Target: 5'- gGGGCugGUGGCcGACCGCC-GCUuccaCGCc- -3' miRNA: 3'- -CCCG--CAUCGaCUGGCGGuCGA----GCGuc -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 50422 | 0.67 | 0.751421 |
Target: 5'- aGGGaCGgcaGGCaGGCCGCaAGCUuCGCGGc -3' miRNA: 3'- -CCC-GCa--UCGaCUGGCGgUCGA-GCGUC- -5' |
|||||||
29143 | 3' | -59.4 | NC_006146.1 | + | 147104 | 0.67 | 0.751421 |
Target: 5'- uGGGCG-AGCUGgggcucagcggGCC-CCAGacgCGCAGg -3' miRNA: 3'- -CCCGCaUCGAC-----------UGGcGGUCga-GCGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home