miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29143 3' -59.4 NC_006146.1 + 147173 0.66 0.805505
Target:  5'- cGGCGgcGCaGACCGgcgccccuucgcCCGGUgCGCAGa -3'
miRNA:   3'- cCCGCauCGaCUGGC------------GGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 156584 0.66 0.805505
Target:  5'- -uGCGUgaguucuccAGCagGugCGCCAGCUC-CAGg -3'
miRNA:   3'- ccCGCA---------UCGa-CugGCGGUCGAGcGUC- -5'
29143 3' -59.4 NC_006146.1 + 51691 0.66 0.796815
Target:  5'- gGGGCGggGGCUGAUCGuCCuccGUgUCGguGg -3'
miRNA:   3'- -CCCGCa-UCGACUGGC-GGu--CG-AGCguC- -5'
29143 3' -59.4 NC_006146.1 + 62382 0.66 0.796815
Target:  5'- aGGCcc--CUGGCCGuUCAGCUCGCGa -3'
miRNA:   3'- cCCGcaucGACUGGC-GGUCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 56367 0.66 0.795939
Target:  5'- aGGCGUGGUggcgGagcaccGCCGCCGgguaagcguggccGCUCGCGa -3'
miRNA:   3'- cCCGCAUCGa---C------UGGCGGU-------------CGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 115368 0.66 0.79506
Target:  5'- cGGCGUGGCggcggagcuggaGGCCcugGCC-GCUCGCGu -3'
miRNA:   3'- cCCGCAUCGa-----------CUGG---CGGuCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 170598 0.66 0.787985
Target:  5'- uGGGCGUGGCgaGCgCGCCgGGCcCGCc- -3'
miRNA:   3'- -CCCGCAUCGacUG-GCGG-UCGaGCGuc -5'
29143 3' -59.4 NC_006146.1 + 19141 0.66 0.787985
Target:  5'- aGGCGcaaGGCUGACgggGCCAGCgugUGCGu -3'
miRNA:   3'- cCCGCa--UCGACUGg--CGGUCGa--GCGUc -5'
29143 3' -59.4 NC_006146.1 + 11532 0.66 0.787985
Target:  5'- -uGCG-AGCUGGCgGUCAGCUaCGCc- -3'
miRNA:   3'- ccCGCaUCGACUGgCGGUCGA-GCGuc -5'
29143 3' -59.4 NC_006146.1 + 123923 0.66 0.787095
Target:  5'- cGGGCGcaauuccUGGCggcGGCCggGCCGGCgaaauaCGCGGg -3'
miRNA:   3'- -CCCGC-------AUCGa--CUGG--CGGUCGa-----GCGUC- -5'
29143 3' -59.4 NC_006146.1 + 33970 0.66 0.779023
Target:  5'- uGGGCGUGguccGCUGGguCCGCUGGUcCGguGc -3'
miRNA:   3'- -CCCGCAU----CGACU--GGCGGUCGaGCguC- -5'
29143 3' -59.4 NC_006146.1 + 64252 0.66 0.779023
Target:  5'- aGGaCGgccCUGACCaGCCGGC-CGCAGc -3'
miRNA:   3'- cCC-GCaucGACUGG-CGGUCGaGCGUC- -5'
29143 3' -59.4 NC_006146.1 + 56856 0.66 0.773585
Target:  5'- gGGGCGgcagcuuuggcuggGGCUGGCgGCCcccguGUUCGgGGa -3'
miRNA:   3'- -CCCGCa-------------UCGACUGgCGGu----CGAGCgUC- -5'
29143 3' -59.4 NC_006146.1 + 65022 0.66 0.769935
Target:  5'- aGGgGgcGCUGGCCGCUAuCUUGCc- -3'
miRNA:   3'- cCCgCauCGACUGGCGGUcGAGCGuc -5'
29143 3' -59.4 NC_006146.1 + 54883 0.66 0.769935
Target:  5'- cGGGCGUAGCgGG--GUCcGCUCGCGc -3'
miRNA:   3'- -CCCGCAUCGaCUggCGGuCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 102877 0.66 0.769935
Target:  5'- uGGuCGUGGCcgGGCC-CCAGUUUGCGc -3'
miRNA:   3'- cCC-GCAUCGa-CUGGcGGUCGAGCGUc -5'
29143 3' -59.4 NC_006146.1 + 57144 0.66 0.769935
Target:  5'- gGGGCugGUGGCcGACCGCC-GCUuccaCGCc- -3'
miRNA:   3'- -CCCG--CAUCGaCUGGCGGuCGA----GCGuc -5'
29143 3' -59.4 NC_006146.1 + 41144 0.66 0.769935
Target:  5'- gGGGCGUGcGCUGACUcUguGCaauaUCGCAa -3'
miRNA:   3'- -CCCGCAU-CGACUGGcGguCG----AGCGUc -5'
29143 3' -59.4 NC_006146.1 + 33784 0.67 0.751421
Target:  5'- uGGGCGUGGUccgaUGGguCCGCgGGUUUGguGc -3'
miRNA:   3'- -CCCGCAUCG----ACU--GGCGgUCGAGCguC- -5'
29143 3' -59.4 NC_006146.1 + 33227 0.67 0.751421
Target:  5'- gGGGCagccGGgUGGCCGCCGGCgggucCGcCGGg -3'
miRNA:   3'- -CCCGca--UCgACUGGCGGUCGa----GC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.