Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29146 | 5' | -61.2 | NC_006146.1 | + | 66542 | 0.66 | 0.686762 |
Target: 5'- cAGGGGGGCCccgaugucuuugaucUUguGGcgcAGgCGGCGCAg -3' miRNA: 3'- -UCCCUCCGG---------------AAguCC---UCgGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 43275 | 0.66 | 0.682807 |
Target: 5'- cAGGGcGGCCUggAGGu-CCGGCAgGUg -3' miRNA: 3'- -UCCCuCCGGAagUCCucGGCCGUgUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 14034 | 0.66 | 0.682807 |
Target: 5'- cAGGGA-GCaggCGGGGGCaGGCGCAa -3' miRNA: 3'- -UCCCUcCGgaaGUCCUCGgCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 10670 | 0.66 | 0.682807 |
Target: 5'- cGGGGAGGCC--CGGGGcgauacccGCgGGCAuCAUg -3' miRNA: 3'- -UCCCUCCGGaaGUCCU--------CGgCCGU-GUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 129377 | 0.66 | 0.676863 |
Target: 5'- gAGGGAagcggcGGCCUccUCuGGGGCCGGaagccugccccagacCACAa -3' miRNA: 3'- -UCCCU------CCGGA--AGuCCUCGGCC---------------GUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 157110 | 0.66 | 0.672893 |
Target: 5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3' miRNA: 3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 154032 | 0.66 | 0.672893 |
Target: 5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3' miRNA: 3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 150954 | 0.66 | 0.672893 |
Target: 5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3' miRNA: 3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 147876 | 0.66 | 0.672893 |
Target: 5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3' miRNA: 3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 144798 | 0.66 | 0.672893 |
Target: 5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3' miRNA: 3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 141720 | 0.66 | 0.672893 |
Target: 5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3' miRNA: 3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 75271 | 0.66 | 0.672893 |
Target: 5'- cGGGGAuGGCCg--AGGAGCCGaGaGCGUc -3' miRNA: 3'- -UCCCU-CCGGaagUCCUCGGC-CgUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 24200 | 0.66 | 0.671899 |
Target: 5'- gAGGGcuGGGCCUgcgagguUCuguuGGGGCCGGgGCc- -3' miRNA: 3'- -UCCC--UCCGGA-------AGu---CCUCGGCCgUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 44794 | 0.66 | 0.667923 |
Target: 5'- cAGGGGGGCgcagcgucuaauaCUgggaccucuguaGGGGGCCGGCGCc- -3' miRNA: 3'- -UCCCUCCG-------------GAag----------UCCUCGGCCGUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 158396 | 0.66 | 0.662947 |
Target: 5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3' miRNA: 3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 155317 | 0.66 | 0.662947 |
Target: 5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3' miRNA: 3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 152239 | 0.66 | 0.662947 |
Target: 5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3' miRNA: 3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 149161 | 0.66 | 0.662947 |
Target: 5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3' miRNA: 3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 146083 | 0.66 | 0.662947 |
Target: 5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3' miRNA: 3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 143005 | 0.66 | 0.662947 |
Target: 5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3' miRNA: 3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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