miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 66542 0.66 0.686762
Target:  5'- cAGGGGGGCCccgaugucuuugaucUUguGGcgcAGgCGGCGCAg -3'
miRNA:   3'- -UCCCUCCGG---------------AAguCC---UCgGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 10670 0.66 0.682807
Target:  5'- cGGGGAGGCC--CGGGGcgauacccGCgGGCAuCAUg -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------CGgCCGU-GUA- -5'
29146 5' -61.2 NC_006146.1 + 43275 0.66 0.682807
Target:  5'- cAGGGcGGCCUggAGGu-CCGGCAgGUg -3'
miRNA:   3'- -UCCCuCCGGAagUCCucGGCCGUgUA- -5'
29146 5' -61.2 NC_006146.1 + 14034 0.66 0.682807
Target:  5'- cAGGGA-GCaggCGGGGGCaGGCGCAa -3'
miRNA:   3'- -UCCCUcCGgaaGUCCUCGgCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 129377 0.66 0.676863
Target:  5'- gAGGGAagcggcGGCCUccUCuGGGGCCGGaagccugccccagacCACAa -3'
miRNA:   3'- -UCCCU------CCGGA--AGuCCUCGGCC---------------GUGUa -5'
29146 5' -61.2 NC_006146.1 + 141720 0.66 0.672893
Target:  5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3'
miRNA:   3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 144798 0.66 0.672893
Target:  5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3'
miRNA:   3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 147876 0.66 0.672893
Target:  5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3'
miRNA:   3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 150954 0.66 0.672893
Target:  5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3'
miRNA:   3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 154032 0.66 0.672893
Target:  5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3'
miRNA:   3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 157110 0.66 0.672893
Target:  5'- gAGGGGGGCCggggaGGGAGgCGGgGa-- -3'
miRNA:   3'- -UCCCUCCGGaag--UCCUCgGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 75271 0.66 0.672893
Target:  5'- cGGGGAuGGCCg--AGGAGCCGaGaGCGUc -3'
miRNA:   3'- -UCCCU-CCGGaagUCCUCGGC-CgUGUA- -5'
29146 5' -61.2 NC_006146.1 + 24200 0.66 0.671899
Target:  5'- gAGGGcuGGGCCUgcgagguUCuguuGGGGCCGGgGCc- -3'
miRNA:   3'- -UCCC--UCCGGA-------AGu---CCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 44794 0.66 0.667923
Target:  5'- cAGGGGGGCgcagcgucuaauaCUgggaccucuguaGGGGGCCGGCGCc- -3'
miRNA:   3'- -UCCCUCCG-------------GAag----------UCCUCGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 137394 0.66 0.662947
Target:  5'- gAGGGAGGCCgggaGGGuGCUGGgGu-- -3'
miRNA:   3'- -UCCCUCCGGaag-UCCuCGGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 143005 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 146083 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 149161 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 152239 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 155317 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.