Results 41 - 60 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 52965 | 0.66 | 0.529331 |
Target: 5'- -cGCCGGAGaaGGCcgguagugcgcagGCGGACCugCCG-GCCg -3' miRNA: 3'- uaCGGUCUC--CCG-------------CGCCUGG--GGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 9150 | 0.66 | 0.530257 |
Target: 5'- uUGCCucuuucGGGGacgGCGGGCUcccaCCGUGCCa -3' miRNA: 3'- uACGGuc----UCCCg--CGCCUGG----GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 11989 | 0.66 | 0.530257 |
Target: 5'- cUGCCAG-GGGCagaagagcucGCuGACUCCgGUGCCc -3' miRNA: 3'- uACGGUCuCCCG----------CGcCUGGGG-CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 41831 | 0.66 | 0.530257 |
Target: 5'- -gGCCGGAugucGCGgGGGCUguCUGCGCCg -3' miRNA: 3'- uaCGGUCUcc--CGCgCCUGG--GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 102901 | 0.66 | 0.530257 |
Target: 5'- -cGCCAGGGGcCGUGuGGCguggCUGCGCCc -3' miRNA: 3'- uaCGGUCUCCcGCGC-CUGg---GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 118232 | 0.66 | 0.492828 |
Target: 5'- gAUGUCcuggacgAGGGGGCGaggcuGGACgCCCucauGCGCCa -3' miRNA: 3'- -UACGG-------UCUCCCGCg----CCUG-GGG----CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 72202 | 0.66 | 0.491032 |
Target: 5'- -gGCCGGAuGGGCGgGaGACCagcggccccacccaCUGCGCg -3' miRNA: 3'- uaCGGUCU-CCCGCgC-CUGG--------------GGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 1763 | 0.66 | 0.48299 |
Target: 5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3' miRNA: 3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 2695 | 0.66 | 0.48299 |
Target: 5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3' miRNA: 3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 3627 | 0.66 | 0.48299 |
Target: 5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3' miRNA: 3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92020 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92050 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92109 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92139 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92169 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92199 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92259 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 92289 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 122247 | 0.66 | 0.484772 |
Target: 5'- -gGCCAGGauucagaaGGCGCuGGGCaCCCGC-CCg -3' miRNA: 3'- uaCGGUCUc-------CCGCG-CCUG-GGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 129233 | 0.66 | 0.484772 |
Target: 5'- -aGCCAGcAGGGa-CGGGCCCaggugagGCGCg -3' miRNA: 3'- uaCGGUC-UCCCgcGCCUGGGg------CGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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