Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29150 | 5' | -57.8 | NC_006146.1 | + | 47054 | 0.66 | 0.87342 |
Target: 5'- -gGGGCCGgucgccGGUgucgGUgagGGGGCgCCu -3' miRNA: 3'- caCCCGGCa-----CCAacaaCAa--CCCCG-GG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 18866 | 0.66 | 0.866169 |
Target: 5'- -gGGGUgGUGGacg-UGcgGGGGCCUc -3' miRNA: 3'- caCCCGgCACCaacaACaaCCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 89173 | 0.66 | 0.858714 |
Target: 5'- -aGGGCUGUGaUUccacaucaGUUGUauccUGGGGCUCc -3' miRNA: 3'- caCCCGGCACcAA--------CAACA----ACCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 163687 | 0.66 | 0.858714 |
Target: 5'- uGUGcaGGCgCGUGGgccUUGgUGGGGCCa -3' miRNA: 3'- -CAC--CCG-GCACCaacAACaACCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 131615 | 0.66 | 0.858714 |
Target: 5'- -gGGGCUGUGGUaGUg---GGGGUg- -3' miRNA: 3'- caCCCGGCACCAaCAacaaCCCCGgg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 60104 | 0.66 | 0.851062 |
Target: 5'- -cGGGCC--GGUUGgcGUUcugugcaaGGGGCCg -3' miRNA: 3'- caCCCGGcaCCAACaaCAA--------CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 153447 | 0.66 | 0.851062 |
Target: 5'- -gGGGCCG-GuGUUG-UGUUGuuGCCCu -3' miRNA: 3'- caCCCGGCaC-CAACaACAACccCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 88347 | 0.66 | 0.851062 |
Target: 5'- uUGGGCCcaGGggGUUaaaGGaGGCCCa -3' miRNA: 3'- cACCCGGcaCCaaCAAcaaCC-CCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 170199 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 51832 | 0.66 | 0.843218 |
Target: 5'- -gGGGCggCGUGGagGggGgcucGGGGCCUg -3' miRNA: 3'- caCCCG--GCACCaaCaaCaa--CCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 167404 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 168336 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 169268 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 95076 | 0.66 | 0.843218 |
Target: 5'- gGUGGcaGCUGUGGUgggGUUGcUGgaaccuGGGCCUg -3' miRNA: 3'- -CACC--CGGCACCAa--CAACaAC------CCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 44323 | 0.66 | 0.840029 |
Target: 5'- -gGGGCCGUGGcagccg--GGGGCUUc -3' miRNA: 3'- caCCCGGCACCaacaacaaCCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 100013 | 0.66 | 0.835189 |
Target: 5'- -cGGGCaCGUcGGgaGgcGgcGGGGUCCg -3' miRNA: 3'- caCCCG-GCA-CCaaCaaCaaCCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 33235 | 0.67 | 0.826983 |
Target: 5'- -gGGGCUGgGGUuccgGggGUgGGGGCuCCa -3' miRNA: 3'- caCCCGGCaCCAa---CaaCAaCCCCG-GG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 70546 | 0.67 | 0.826983 |
Target: 5'- -aGGGCgGUGGUgggguauauggGUUG-UGGGcaucguGCCCg -3' miRNA: 3'- caCCCGgCACCAa----------CAACaACCC------CGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 80315 | 0.67 | 0.792523 |
Target: 5'- -aGaGGUCGUGGU--UUGgcgacUGGGGCCUu -3' miRNA: 3'- caC-CCGGCACCAacAACa----ACCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 83750 | 0.67 | 0.792523 |
Target: 5'- uGUGGGCCGUGaGcaGUg---GGuGGCCUg -3' miRNA: 3'- -CACCCGGCAC-CaaCAacaaCC-CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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