miRNA display CGI


Results 21 - 40 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 164634 0.79 0.317587
Target:  5'- uAGAuGAUCGGggucGCCAGACGGACCCUg -3'
miRNA:   3'- uUCUcCUGGCCa---UGGUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 164519 1.1 0.002978
Target:  5'- cAAGAGGACCGGUACCAAACGGACCCCa -3'
miRNA:   3'- -UUCUCCUGGCCAUGGUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 164479 0.7 0.762011
Target:  5'- --cAGGGCCcacauGGcccuggGCCAAAgGGACCCCa -3'
miRNA:   3'- uucUCCUGG-----CCa-----UGGUUUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 161427 0.68 0.841164
Target:  5'- cAGuGG-CUGaUGCCAGagggcGCGGACCCCg -3'
miRNA:   3'- uUCuCCuGGCcAUGGUU-----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 161416 0.7 0.780614
Target:  5'- --uAGG-CCuGUGCCAGGCGGgugugGCCCCg -3'
miRNA:   3'- uucUCCuGGcCAUGGUUUGCC-----UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 160421 0.72 0.653527
Target:  5'- uAGAGGGCgaGGUAgUggGCGGugGCCCCc -3'
miRNA:   3'- uUCUCCUGg-CCAUgGuuUGCC--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 159238 0.67 0.907845
Target:  5'- uGGGGGGccaggcuggcauuauAUCGGUgcaacgccGCCAcGCGGGCCUCg -3'
miRNA:   3'- -UUCUCC---------------UGGCCA--------UGGUuUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 159021 0.67 0.892644
Target:  5'- ---cGGGCCccguuGGUGCCAGucaacguCGGGCCCg -3'
miRNA:   3'- uucuCCUGG-----CCAUGGUUu------GCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 158422 0.7 0.762011
Target:  5'- -uGGGGaaGCCGGaguCCAGAgGGGCCCg -3'
miRNA:   3'- uuCUCC--UGGCCau-GGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 158119 0.68 0.849128
Target:  5'- aGAGGGGACCGGguguugggACCugguGGCGcccgccGGCUCCa -3'
miRNA:   3'- -UUCUCCUGGCCa-------UGGu---UUGC------CUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 157843 0.69 0.824684
Target:  5'- gGAGGGGACgGGcACCGAGCGccGCCUg -3'
miRNA:   3'- -UUCUCCUGgCCaUGGUUUGCc-UGGGg -5'
29151 3' -55.8 NC_006146.1 + 157762 0.68 0.829703
Target:  5'- uGGGAGGuCCGGgguguugagccugcUGCCccaggagAGGcCGGACCCCg -3'
miRNA:   3'- -UUCUCCuGGCC--------------AUGG-------UUU-GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 157591 0.75 0.500988
Target:  5'- aGAGGGGAgCGGagACCAGgaggacgccuggagGCGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa-UGGUU--------------UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 157064 0.69 0.816182
Target:  5'- -cGGGGucccuCCGGccgGCCuGAUGGACCCg -3'
miRNA:   3'- uuCUCCu----GGCCa--UGGuUUGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 156920 0.66 0.933245
Target:  5'- -cGAGGcCUGGgugGCgGcgcuGACGGGCUCCg -3'
miRNA:   3'- uuCUCCuGGCCa--UGgU----UUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156842 0.72 0.623108
Target:  5'- cGGGAGGACCGcaGCCAGcCGGcgcuugcgccuGCCCCc -3'
miRNA:   3'- -UUCUCCUGGCcaUGGUUuGCC-----------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156634 0.69 0.816182
Target:  5'- uGAGuGGACUGGgccucuuCCucgaGGACCCCu -3'
miRNA:   3'- -UUCuCCUGGCCau-----GGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156524 0.68 0.841164
Target:  5'- gGAGGGGAgCGGgagGCgAGAUcccgGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa--UGgUUUG----CCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 156204 0.71 0.72254
Target:  5'- --cGGGACCgccagguGGUugCAGgagacGCGGGCCCCc -3'
miRNA:   3'- uucUCCUGG-------CCAugGUU-----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 155548 0.67 0.904787
Target:  5'- cGAGAGGGCguUGGaGCCGGGCucgcgcgGGGCgCCCg -3'
miRNA:   3'- -UUCUCCUG--GCCaUGGUUUG-------CCUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.