miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 152295 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 152029 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 151151 0.67 0.356599
Target:  5'- -gGUCUGgacuggagGGCCCUgggagGCCCCUGUCCg -3'
miRNA:   3'- caCGGACa-------CCGGGGg----CGGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 149217 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 148951 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 148073 0.67 0.356599
Target:  5'- -gGUCUGgacuggagGGCCCUgggagGCCCCUGUCCg -3'
miRNA:   3'- caCGGACa-------CCGGGGg----CGGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 146139 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 145873 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 144995 0.67 0.356599
Target:  5'- -gGUCUGgacuggagGGCCCUgggagGCCCCUGUCCg -3'
miRNA:   3'- caCGGACa-------CCGGGGg----CGGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 144784 0.74 0.133305
Target:  5'- gGUGCCuuuccauggaccaauUGUGGCCUCCGUgCCU-CCCCu -3'
miRNA:   3'- -CACGG---------------ACACCGGGGGCGgGGAcGGGG- -5'
29153 5' -67.3 NC_006146.1 + 143061 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 142971 0.72 0.188256
Target:  5'- aUGCCaGggGGCUUCCGCCCUaGCCCUu -3'
miRNA:   3'- cACGGaCa-CCGGGGGCGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 142795 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 142110 0.66 0.41042
Target:  5'- cUGCCccaaGUGaGCCCUCgGCCCCaggguaUGCuCCCa -3'
miRNA:   3'- cACGGa---CAC-CGGGGG-CGGGG------ACG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 141917 0.67 0.356599
Target:  5'- -gGUCUGgacuggagGGCCCUgggagGCCCCUGUCCg -3'
miRNA:   3'- caCGGACa-------CCGGGGg----CGGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 141311 0.72 0.171472
Target:  5'- -aGCCUGgcUGaGCCCCCGgggUCCUGUCCCa -3'
miRNA:   3'- caCGGAC--AC-CGGGGGCg--GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 138948 0.66 0.43498
Target:  5'- -gGCCUaaccUGGCCCUgGCuuuggCCUUGCCCUu -3'
miRNA:   3'- caCGGAc---ACCGGGGgCG-----GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 138871 0.69 0.294995
Target:  5'- aUGaCCUG-GGCCagcgcCUCGUCCCgagGCCCCu -3'
miRNA:   3'- cAC-GGACaCCGG-----GGGCGGGGa--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 137865 0.68 0.34216
Target:  5'- -gGCgUGUcccGGgCCCCGCCCCggGCCg- -3'
miRNA:   3'- caCGgACA---CCgGGGGCGGGGa-CGGgg -5'
29153 5' -67.3 NC_006146.1 + 137521 0.7 0.247474
Target:  5'- gGUGCCccUG-GGUCCgCUGCCCC-GCUCCg -3'
miRNA:   3'- -CACGG--ACaCCGGG-GGCGGGGaCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.