Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29154 | 5' | -75.3 | NC_006146.1 | + | 5156 | 0.66 | 0.227092 |
Target: 5'- --uUCCCaUCCCCCUCCCUgaCCCCCGc -3' miRNA: 3'- cacGGGG-GGGGGGGGGGGggGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 17096 | 0.66 | 0.227092 |
Target: 5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3' miRNA: 3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 29408 | 0.66 | 0.227092 |
Target: 5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3' miRNA: 3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 23252 | 0.66 | 0.227092 |
Target: 5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3' miRNA: 3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 26330 | 0.66 | 0.227092 |
Target: 5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3' miRNA: 3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 125352 | 0.66 | 0.227092 |
Target: 5'- cGUGUCUUCCCUCCCCUgCCUggCCCUGg -3' miRNA: 3'- -CACGGGGGGGGGGGGGgGGGg-GGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 20174 | 0.66 | 0.227092 |
Target: 5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3' miRNA: 3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 14018 | 0.66 | 0.227092 |
Target: 5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3' miRNA: 3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 119660 | 0.66 | 0.222762 |
Target: 5'- -aGCCCCCUCaagcggcuacuccaaCUCCUCagCCCCCCCa -3' miRNA: 3'- caCGGGGGGGg--------------GGGGGGg-GGGGGGGc -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 119325 | 0.66 | 0.217565 |
Target: 5'- -aGUCCCCCCUUcggccgcgCCgCCUCCCCaCCCa -3' miRNA: 3'- caCGGGGGGGGG--------GGgGGGGGGG-GGGc -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 160177 | 0.66 | 0.217565 |
Target: 5'- uGUGCCCUCCCCaCUUCUCUUCCCguuaaCCGu -3' miRNA: 3'- -CACGGGGGGGG-GGGGGGGGGGGg----GGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 93024 | 0.66 | 0.212931 |
Target: 5'- cGUGCUCCgaCCCCUCCUaaaCCCCCGa -3' miRNA: 3'- -CACGGGGggGGGGGGGGgggGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 100349 | 0.66 | 0.212931 |
Target: 5'- aUGCCCacaaCCCauauaCCCCaCCaCCgCCCUCCGa -3' miRNA: 3'- cACGGGg---GGGg----GGGG-GG-GG-GGGGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 120869 | 0.66 | 0.212931 |
Target: 5'- -cGCCUCCCUCCUgCgCCUCgaCCCCGg -3' miRNA: 3'- caCGGGGGGGGGGgGgGGGGg-GGGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 113554 | 0.66 | 0.212931 |
Target: 5'- -aGCCUCCCUCaccgacaCCCggggCCCCgCCCCCa -3' miRNA: 3'- caCGGGGGGGGg------GGG----GGGGgGGGGGc -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 30770 | 0.66 | 0.208381 |
Target: 5'- -gGCaCCCCCgCCaCCaCCUCCgCCaCCCCCu -3' miRNA: 3'- caCG-GGGGG-GG-GG-GGGGG-GG-GGGGGc -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 138546 | 0.66 | 0.208381 |
Target: 5'- gGUGCCCCCCUauccuaCCUcgaggugcgccaCCCUUCCUCCCu -3' miRNA: 3'- -CACGGGGGGGg-----GGG------------GGGGGGGGGGGc -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 33513 | 0.66 | 0.203916 |
Target: 5'- -aGCaCCCUCCCggCCUCCCUCCCUagguugugCCCGg -3' miRNA: 3'- caCG-GGGGGGG--GGGGGGGGGGG--------GGGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 101372 | 0.66 | 0.203916 |
Target: 5'- aUGCCCCCaCCCCCCaUUCCUCaCCacaggCCGa -3' miRNA: 3'- cACGGGGG-GGGGGG-GGGGGG-GGg----GGC- -5' |
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29154 | 5' | -75.3 | NC_006146.1 | + | 149316 | 0.66 | 0.203916 |
Target: 5'- uUGCCCCCUugaUCCCCCCCUUaggCUCCaCGa -3' miRNA: 3'- cACGGGGGG---GGGGGGGGGGg--GGGG-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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