miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 5156 0.66 0.227092
Target:  5'- --uUCCCaUCCCCCUCCCUgaCCCCCGc -3'
miRNA:   3'- cacGGGG-GGGGGGGGGGGggGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 23252 0.66 0.227092
Target:  5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3'
miRNA:   3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 26330 0.66 0.227092
Target:  5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3'
miRNA:   3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 14018 0.66 0.227092
Target:  5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3'
miRNA:   3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 125352 0.66 0.227092
Target:  5'- cGUGUCUUCCCUCCCCUgCCUggCCCUGg -3'
miRNA:   3'- -CACGGGGGGGGGGGGGgGGGg-GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 17096 0.66 0.227092
Target:  5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3'
miRNA:   3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 20174 0.66 0.227092
Target:  5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3'
miRNA:   3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 29408 0.66 0.227092
Target:  5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3'
miRNA:   3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 119660 0.66 0.222762
Target:  5'- -aGCCCCCUCaagcggcuacuccaaCUCCUCagCCCCCCCa -3'
miRNA:   3'- caCGGGGGGGg--------------GGGGGGg-GGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 160177 0.66 0.217565
Target:  5'- uGUGCCCUCCCCaCUUCUCUUCCCguuaaCCGu -3'
miRNA:   3'- -CACGGGGGGGG-GGGGGGGGGGGg----GGC- -5'
29154 5' -75.3 NC_006146.1 + 119325 0.66 0.217565
Target:  5'- -aGUCCCCCCUUcggccgcgCCgCCUCCCCaCCCa -3'
miRNA:   3'- caCGGGGGGGGG--------GGgGGGGGGG-GGGc -5'
29154 5' -75.3 NC_006146.1 + 100349 0.66 0.212931
Target:  5'- aUGCCCacaaCCCauauaCCCCaCCaCCgCCCUCCGa -3'
miRNA:   3'- cACGGGg---GGGg----GGGG-GG-GG-GGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 93024 0.66 0.212931
Target:  5'- cGUGCUCCgaCCCCUCCUaaaCCCCCGa -3'
miRNA:   3'- -CACGGGGggGGGGGGGGgggGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 113554 0.66 0.212931
Target:  5'- -aGCCUCCCUCaccgacaCCCggggCCCCgCCCCCa -3'
miRNA:   3'- caCGGGGGGGGg------GGG----GGGGgGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 120869 0.66 0.212931
Target:  5'- -cGCCUCCCUCCUgCgCCUCgaCCCCGg -3'
miRNA:   3'- caCGGGGGGGGGGgGgGGGGg-GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 138546 0.66 0.208381
Target:  5'- gGUGCCCCCCUauccuaCCUcgaggugcgccaCCCUUCCUCCCu -3'
miRNA:   3'- -CACGGGGGGGg-----GGG------------GGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 30770 0.66 0.208381
Target:  5'- -gGCaCCCCCgCCaCCaCCUCCgCCaCCCCCu -3'
miRNA:   3'- caCG-GGGGG-GG-GG-GGGGG-GG-GGGGGc -5'
29154 5' -75.3 NC_006146.1 + 101372 0.66 0.203916
Target:  5'- aUGCCCCCaCCCCCCaUUCCUCaCCacaggCCGa -3'
miRNA:   3'- cACGGGGG-GGGGGG-GGGGGG-GGg----GGC- -5'
29154 5' -75.3 NC_006146.1 + 33513 0.66 0.203916
Target:  5'- -aGCaCCCUCCCggCCUCCCUCCCUagguugugCCCGg -3'
miRNA:   3'- caCG-GGGGGGG--GGGGGGGGGGG--------GGGC- -5'
29154 5' -75.3 NC_006146.1 + 149316 0.66 0.203916
Target:  5'- uUGCCCCCUugaUCCCCCCCUUaggCUCCaCGa -3'
miRNA:   3'- cACGGGGGG---GGGGGGGGGGg--GGGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.