miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29155 5' -55.6 NC_006146.1 + 158235 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 155156 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 152078 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 149000 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 145922 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 142844 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 107095 0.66 0.941375
Target:  5'- cCgGGGGAGUGGGUggguCUGgGaaGGGGCc -3'
miRNA:   3'- -GgUCUUUCACCCGu---GACaCggUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 64451 0.66 0.941375
Target:  5'- aCAGccuuGGGUG-GCGCUGUccuGCUgaAGGGCa -3'
miRNA:   3'- gGUCu---UUCACcCGUGACA---CGG--UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 49469 0.66 0.941374
Target:  5'- aCCGGGAuGGUgaGGGcCGCgGUGUCggccaGGGGCg -3'
miRNA:   3'- -GGUCUU-UCA--CCC-GUGaCACGG-----UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 140394 0.66 0.936645
Target:  5'- uCCAGGAuGUcaGCuCUGUGUUGGGGCc -3'
miRNA:   3'- -GGUCUUuCAccCGuGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 86071 0.66 0.936645
Target:  5'- uCUGGAucAAG-GGGCAUgucuagGCCAGGGg -3'
miRNA:   3'- -GGUCU--UUCaCCCGUGaca---CGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 158809 0.66 0.936645
Target:  5'- -aAGAgcGUGuucaGGCACacgGCCGGGGCc -3'
miRNA:   3'- ggUCUuuCAC----CCGUGacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 72559 0.66 0.936645
Target:  5'- gCCAa----UGGGCGCcggcgugGUGCUGGGGCu -3'
miRNA:   3'- -GGUcuuucACCCGUGa------CACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 119925 0.66 0.936645
Target:  5'- gCGGucAGUGuuggcagcGGCGCUGcUGCCGGaGGUc -3'
miRNA:   3'- gGUCuuUCAC--------CCGUGAC-ACGGUC-CCG- -5'
29155 5' -55.6 NC_006146.1 + 63352 0.66 0.936645
Target:  5'- gCCGGuAAcUGGGCACaGgGCCcuccuGGGGCu -3'
miRNA:   3'- -GGUCuUUcACCCGUGaCaCGG-----UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 118626 0.66 0.936645
Target:  5'- uCCAGuacGUGGGgGCgc--CCGGGGCc -3'
miRNA:   3'- -GGUCuuuCACCCgUGacacGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 148717 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 151795 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 154873 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 94096 0.66 0.93168
Target:  5'- aCCAGAGAGcagcGGCcuccugauaGCcGUGUgGGGGCg -3'
miRNA:   3'- -GGUCUUUCac--CCG---------UGaCACGgUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.