Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29156 | 5' | -55.6 | NC_006146.1 | + | 169942 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 168078 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 169010 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 167147 | 1.06 | 0.005518 |
Target: 5'- gUAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- gGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 15026 | 0.86 | 0.11324 |
Target: 5'- gCCAGGGAG-GGGCGcCUG-GCCAGGGCc -3' miRNA: 3'- -GGUCUUUCaCCCGU-GACaCGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 95518 | 0.74 | 0.516582 |
Target: 5'- uCCGGGAgcugucgGGUGcGGCGcCUG-GCCAGGGUc -3' miRNA: 3'- -GGUCUU-------UCAC-CCGU-GACaCGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 96950 | 0.74 | 0.527344 |
Target: 5'- uCCGcGAGucUGGGCGCcaggGUGUCGGGGCa -3' miRNA: 3'- -GGU-CUUucACCCGUGa---CACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 51165 | 0.74 | 0.557095 |
Target: 5'- gUCGGA--GUGGGCugUGgaGCCGGGGa -3' miRNA: 3'- -GGUCUuuCACCCGugACa-CGGUCCCg -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 79099 | 0.73 | 0.567122 |
Target: 5'- cCCAGAAAGcUGGGUuucguaaggcccGCggGUGCCAGcacGGCa -3' miRNA: 3'- -GGUCUUUC-ACCCG------------UGa-CACGGUC---CCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 44307 | 0.73 | 0.577195 |
Target: 5'- aCCGGu-AGUGGGgGCUGggGCCGuGGCa -3' miRNA: 3'- -GGUCuuUCACCCgUGACa-CGGUcCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 150671 | 0.73 | 0.597451 |
Target: 5'- gCCGGGgagGGGUGGGgAgUG-GCCAGGGg -3' miRNA: 3'- -GGUCU---UUCACCCgUgACaCGGUCCCg -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 157673 | 0.73 | 0.597451 |
Target: 5'- aCAGAGAGaGGGCAgaGccaGCCAGcGGCu -3' miRNA: 3'- gGUCUUUCaCCCGUgaCa--CGGUC-CCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 62414 | 0.73 | 0.60762 |
Target: 5'- uCCGGAAccccgGGUGGGCugGCUGaagcgGCCuccGGGCu -3' miRNA: 3'- -GGUCUU-----UCACCCG--UGACa----CGGu--CCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 102037 | 0.73 | 0.617807 |
Target: 5'- aCUGGAAcuugcugucAGUGGGUugUuGUGUgGGGGCa -3' miRNA: 3'- -GGUCUU---------UCACCCGugA-CACGgUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 145361 | 0.73 | 0.617808 |
Target: 5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3' miRNA: 3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 147593 | 0.73 | 0.617808 |
Target: 5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3' miRNA: 3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 148439 | 0.73 | 0.617808 |
Target: 5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3' miRNA: 3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 141437 | 0.73 | 0.617808 |
Target: 5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3' miRNA: 3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 153748 | 0.73 | 0.617808 |
Target: 5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3' miRNA: 3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 144515 | 0.73 | 0.617808 |
Target: 5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3' miRNA: 3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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