Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29156 | 5' | -55.6 | NC_006146.1 | + | 60131 | 0.71 | 0.688979 |
Target: 5'- gCCGGGGgagggaccuGGUGGGgGgugUGUGCCAGGGg -3' miRNA: 3'- -GGUCUU---------UCACCCgUg--ACACGGUCCCg -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 168078 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 169010 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 102037 | 0.73 | 0.617807 |
Target: 5'- aCUGGAAcuugcugucAGUGGGUugUuGUGUgGGGGCa -3' miRNA: 3'- -GGUCUU---------UCACCCGugA-CACGgUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 149828 | 0.72 | 0.638207 |
Target: 5'- uCCGGGugguGUGGGCg----GCCAGGGCc -3' miRNA: 3'- -GGUCUuu--CACCCGugacaCGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 169942 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 51165 | 0.74 | 0.557095 |
Target: 5'- gUCGGA--GUGGGCugUGgaGCCGGGGa -3' miRNA: 3'- -GGUCUuuCACCCGugACa-CGGUCCCg -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 44307 | 0.73 | 0.577195 |
Target: 5'- aCCGGu-AGUGGGgGCUGggGCCGuGGCa -3' miRNA: 3'- -GGUCuuUCACCCgUGACa-CGGUcCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 41599 | 0.71 | 0.688979 |
Target: 5'- gCGGAGAGgcccgGGGgGCUGguccgcuggGCCcGGGCg -3' miRNA: 3'- gGUCUUUCa----CCCgUGACa--------CGGuCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 147088 | 0.71 | 0.727819 |
Target: 5'- gCCAGGgagagagAAGUGGGCGa---GCUGGGGCu -3' miRNA: 3'- -GGUCU-------UUCACCCGUgacaCGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 49469 | 0.66 | 0.941374 |
Target: 5'- aCCGGGAuGGUgaGGGcCGCgGUGUCggccaGGGGCg -3' miRNA: 3'- -GGUCUU-UCA--CCC-GUGaCACGG-----UCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 95518 | 0.74 | 0.516582 |
Target: 5'- uCCGGGAgcugucgGGUGcGGCGcCUG-GCCAGGGUc -3' miRNA: 3'- -GGUCUU-------UCAC-CCGU-GACaCGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 167147 | 1.06 | 0.005518 |
Target: 5'- gUAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- gGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 129120 | 0.72 | 0.658588 |
Target: 5'- gCCuGAGAGcGGGCGCccggGCgCAGGGCc -3' miRNA: 3'- -GGuCUUUCaCCCGUGaca-CG-GUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 44476 | 0.71 | 0.687971 |
Target: 5'- gCAGGAAGcGuGGC-CUGUGCCGugcucgcgaccccGGGCg -3' miRNA: 3'- gGUCUUUCaC-CCGuGACACGGU-------------CCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 96950 | 0.74 | 0.527344 |
Target: 5'- uCCGcGAGucUGGGCGCcaggGUGUCGGGGCa -3' miRNA: 3'- -GGU-CUUucACCCGUGa---CACGGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 166493 | 0.71 | 0.722898 |
Target: 5'- gCUAGAAucgcagcguggugccAGUcGGGCgGCUGUGCCaAGcGGCa -3' miRNA: 3'- -GGUCUU---------------UCA-CCCG-UGACACGG-UC-CCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 52326 | 0.7 | 0.738571 |
Target: 5'- cCCuGAc-GUGGGC-CgggGUGcCCGGGGCg -3' miRNA: 3'- -GGuCUuuCACCCGuGa--CAC-GGUCCCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 79099 | 0.73 | 0.567122 |
Target: 5'- cCCAGAAAGcUGGGUuucguaaggcccGCggGUGCCAGcacGGCa -3' miRNA: 3'- -GGUCUUUC-ACCCG------------UGa-CACGGUC---CCG- -5' |
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29156 | 5' | -55.6 | NC_006146.1 | + | 131472 | 0.72 | 0.638207 |
Target: 5'- cCCAGugcacccAGGUGGGUcugggGUGCCAGGGa -3' miRNA: 3'- -GGUCu------UUCACCCGuga--CACGGUCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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