miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 5' -55.6 NC_006146.1 + 4669 0.68 0.837993
Target:  5'- cCUGGGccGGGUGGGCGag--GCgGGGGCa -3'
miRNA:   3'- -GGUCU--UUCACCCGUgacaCGgUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 4918 0.66 0.915358
Target:  5'- gCCGGAcccucgcugucGGGUGGccguGCuCUGUGCCccggggaccaGGGGCc -3'
miRNA:   3'- -GGUCU-----------UUCACC----CGuGACACGG----------UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 6428 0.69 0.821277
Target:  5'- cCCAGGGccauGUGGGCcCUGggGUCcauGGGGCc -3'
miRNA:   3'- -GGUCUUu---CACCCGuGACa-CGG---UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 9690 0.69 0.821277
Target:  5'- gUCAGcuuuGAAGUGgGGCACgggGUGCCAGuuGCc -3'
miRNA:   3'- -GGUC----UUUCAC-CCGUGa--CACGGUCc-CG- -5'
29156 5' -55.6 NC_006146.1 + 10627 0.67 0.909444
Target:  5'- gCAGuuuucgcuAGUGGGguUUacccgGCCAGGGCu -3'
miRNA:   3'- gGUCuu------UCACCCguGAca---CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 14822 0.67 0.903296
Target:  5'- gCCGGAGGa-GGGCACgGUcucggGcCCGGGGCc -3'
miRNA:   3'- -GGUCUUUcaCCCGUGaCA-----C-GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 15026 0.86 0.11324
Target:  5'- gCCAGGGAG-GGGCGcCUG-GCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCaCCCGU-GACaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 15054 0.7 0.74825
Target:  5'- gCCGGGccugcGAG-GaGGCACUG-GCgGGGGCu -3'
miRNA:   3'- -GGUCU-----UUCaC-CCGUGACaCGgUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 18846 0.72 0.658588
Target:  5'- uCCAGAccccGGGCGC--UGCCGGGGUg -3'
miRNA:   3'- -GGUCUuucaCCCGUGacACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 22289 0.71 0.728801
Target:  5'- -gGGAGGGUGGcauGCAaaGUGCCucuuGGGCu -3'
miRNA:   3'- ggUCUUUCACC---CGUgaCACGGu---CCCG- -5'
29156 5' -55.6 NC_006146.1 + 24198 0.7 0.77757
Target:  5'- -aGGAGGGcUGGGC-CUGcgagguucuguugggGCCGGGGCc -3'
miRNA:   3'- ggUCUUUC-ACCCGuGACa--------------CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 26255 0.67 0.896916
Target:  5'- gCCAGAGguGG-GGGCACggGUggcggaauuaGCCuGGGUg -3'
miRNA:   3'- -GGUCUU--UCaCCCGUGa-CA----------CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 30143 0.66 0.926477
Target:  5'- -aGGggGGUGGGCAUg--GCCacgcauccgagAGcGGCa -3'
miRNA:   3'- ggUCuuUCACCCGUGacaCGG-----------UC-CCG- -5'
29156 5' -55.6 NC_006146.1 + 32751 0.68 0.837994
Target:  5'- cCCAaAAAGUgaauaaaagaaGGcGCGCUG-GCCGGGGUc -3'
miRNA:   3'- -GGUcUUUCA-----------CC-CGUGACaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 33378 0.67 0.911838
Target:  5'- gCCGGGccgcugccccgcuccGGGUGGGgGgUGgcccGCCuGGGCa -3'
miRNA:   3'- -GGUCU---------------UUCACCCgUgACa---CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 36122 0.68 0.869142
Target:  5'- gCUGGguGG-GGGUugUG-GCCuGGGCa -3'
miRNA:   3'- -GGUCuuUCaCCCGugACaCGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 38166 0.67 0.903296
Target:  5'- cCCGGAGAaccgGGGCuACUGggGaCCAccGGGCa -3'
miRNA:   3'- -GGUCUUUca--CCCG-UGACa-C-GGU--CCCG- -5'
29156 5' -55.6 NC_006146.1 + 39729 0.7 0.77757
Target:  5'- aCCAGcuucuucucgcgcuGGUGGGUuucgGCUGgagGCUGGGGCu -3'
miRNA:   3'- -GGUCuu------------UCACCCG----UGACa--CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 39855 0.71 0.678884
Target:  5'- gCCGGc-GG-GGGCugUGUGCCcGGGGg -3'
miRNA:   3'- -GGUCuuUCaCCCGugACACGG-UCCCg -5'
29156 5' -55.6 NC_006146.1 + 41599 0.71 0.688979
Target:  5'- gCGGAGAGgcccgGGGgGCUGguccgcuggGCCcGGGCg -3'
miRNA:   3'- gGUCUUUCa----CCCgUGACa--------CGGuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.