miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 5' -55.6 NC_006146.1 + 170419 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 170300 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 170171 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 169942 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 169704 0.68 0.857067
Target:  5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3'
miRNA:   3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 169488 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 169369 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 169240 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 169010 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 168772 0.68 0.857067
Target:  5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3'
miRNA:   3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 168556 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 168437 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 168308 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 168078 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 167840 0.68 0.857067
Target:  5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3'
miRNA:   3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 167624 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 167505 0.66 0.915358
Target:  5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3'
miRNA:   3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 167376 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 167147 1.06 0.005518
Target:  5'- gUAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- gGUCUUUCACCCGUGACACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 166493 0.71 0.722898
Target:  5'- gCUAGAAucgcagcguggugccAGUcGGGCgGCUGUGCCaAGcGGCa -3'
miRNA:   3'- -GGUCUU---------------UCA-CCCG-UGACACGG-UC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.