miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 5' -55.6 NC_006146.1 + 41711 0.7 0.74825
Target:  5'- gCGGggGGUGcGGCGCUGUgGCCuuuuGCa -3'
miRNA:   3'- gGUCuuUCAC-CCGUGACA-CGGucc-CG- -5'
29156 5' -55.6 NC_006146.1 + 41744 0.67 0.910046
Target:  5'- aCCGGGcccugagacGGGUGGGCuucccgccggaggccCUGcGCCcGGGCg -3'
miRNA:   3'- -GGUCU---------UUCACCCGu--------------GACaCGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 42377 0.69 0.829725
Target:  5'- gCCAG--GGUGGGCGaggGgcgccCCAGGGCc -3'
miRNA:   3'- -GGUCuuUCACCCGUga-Cac---GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 44182 0.66 0.931679
Target:  5'- aCAGGGAGaGGcacgcgcggcuGCACUGcaGCCGGGGg -3'
miRNA:   3'- gGUCUUUCaCC-----------CGUGACa-CGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 44307 0.73 0.577195
Target:  5'- aCCGGu-AGUGGGgGCUGggGCCGuGGCa -3'
miRNA:   3'- -GGUCuuUCACCCgUGACa-CGGUcCCG- -5'
29156 5' -55.6 NC_006146.1 + 44476 0.71 0.687971
Target:  5'- gCAGGAAGcGuGGC-CUGUGCCGugcucgcgaccccGGGCg -3'
miRNA:   3'- gGUCUUUCaC-CCGuGACACGGU-------------CCCG- -5'
29156 5' -55.6 NC_006146.1 + 44767 0.71 0.718947
Target:  5'- uCgGGGGAGaGGGUGCcGUGCC-GGGCu -3'
miRNA:   3'- -GgUCUUUCaCCCGUGaCACGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 45026 0.67 0.883471
Target:  5'- cCCucGAGAGUGaGGgAgaGagGCCGGGGCc -3'
miRNA:   3'- -GGu-CUUUCAC-CCgUgaCa-CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 47980 0.66 0.926476
Target:  5'- gCCAGAgcGUGGGguCagagGUgGCUGGuGGCg -3'
miRNA:   3'- -GGUCUuuCACCCguGa---CA-CGGUC-CCG- -5'
29156 5' -55.6 NC_006146.1 + 48026 0.67 0.903296
Target:  5'- aCCGGGAGGUGcgaggcucGGCACUGUacgaaGCCAGc-- -3'
miRNA:   3'- -GGUCUUUCAC--------CCGUGACA-----CGGUCccg -5'
29156 5' -55.6 NC_006146.1 + 49469 0.66 0.941374
Target:  5'- aCCGGGAuGGUgaGGGcCGCgGUGUCggccaGGGGCg -3'
miRNA:   3'- -GGUCUU-UCA--CCC-GUGaCACGG-----UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 51165 0.74 0.557095
Target:  5'- gUCGGA--GUGGGCugUGgaGCCGGGGa -3'
miRNA:   3'- -GGUCUuuCACCCGugACa-CGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 51270 0.7 0.767295
Target:  5'- cCCGGAGGGUGGcGUugUuggGCCAGGa- -3'
miRNA:   3'- -GGUCUUUCACC-CGugAca-CGGUCCcg -5'
29156 5' -55.6 NC_006146.1 + 51505 0.66 0.926476
Target:  5'- -gGGAAGuuGUGGGguCUG-GCgGGGGUu -3'
miRNA:   3'- ggUCUUU--CACCCguGACaCGgUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 51655 0.71 0.728801
Target:  5'- cCCAGggGGccaGGGC-CgGUGCCGGGa- -3'
miRNA:   3'- -GGUCuuUCa--CCCGuGaCACGGUCCcg -5'
29156 5' -55.6 NC_006146.1 + 52080 0.68 0.846077
Target:  5'- gCCAGGGAGgcGGGCAUcaaguucgaggUGcUGCuCGGGGUc -3'
miRNA:   3'- -GGUCUUUCa-CCCGUG-----------AC-ACG-GUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 52326 0.7 0.738571
Target:  5'- cCCuGAc-GUGGGC-CgggGUGcCCGGGGCg -3'
miRNA:   3'- -GGuCUuuCACCCGuGa--CAC-GGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 53464 0.68 0.861657
Target:  5'- cCCGGGAGGcgcGGGUGCcucgucgGUCAGGGCc -3'
miRNA:   3'- -GGUCUUUCa--CCCGUGaca----CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 55033 0.66 0.926476
Target:  5'- gCGGGAug-GGGguCgggGCCGGGGCc -3'
miRNA:   3'- gGUCUUucaCCCguGacaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 57913 0.7 0.74825
Target:  5'- uCCAGGAcaugcAGaGGGCGCUG-GCCGGcGCc -3'
miRNA:   3'- -GGUCUU-----UCaCCCGUGACaCGGUCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.