miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 5' -55.6 NC_006146.1 + 148439 0.73 0.617808
Target:  5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3'
miRNA:   3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5'
29156 5' -55.6 NC_006146.1 + 151517 0.73 0.617808
Target:  5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3'
miRNA:   3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5'
29156 5' -55.6 NC_006146.1 + 156826 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 153748 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 131472 0.72 0.638207
Target:  5'- cCCAGugcacccAGGUGGGUcugggGUGCCAGGGa -3'
miRNA:   3'- -GGUCu------UUCACCCGuga--CACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 149828 0.72 0.638207
Target:  5'- uCCGGGugguGUGGGCg----GCCAGGGCc -3'
miRNA:   3'- -GGUCUuu--CACCCGugacaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 122610 0.72 0.638208
Target:  5'- -uGGAGGGcgagGGGCGgaGgagGCCGGGGCc -3'
miRNA:   3'- ggUCUUUCa---CCCGUgaCa--CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 129120 0.72 0.658588
Target:  5'- gCCuGAGAGcGGGCGCccggGCgCAGGGCc -3'
miRNA:   3'- -GGuCUUUCaCCCGUGaca-CG-GUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 18846 0.72 0.658588
Target:  5'- uCCAGAccccGGGCGC--UGCCGGGGUg -3'
miRNA:   3'- -GGUCUuucaCCCGUGacACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 62930 0.72 0.658588
Target:  5'- gCGGAGGGUGaGGC--UGUGCCuguggagguuaGGGGCa -3'
miRNA:   3'- gGUCUUUCAC-CCGugACACGG-----------UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 39855 0.71 0.678884
Target:  5'- gCCGGc-GG-GGGCugUGUGCCcGGGGg -3'
miRNA:   3'- -GGUCuuUCaCCCGugACACGG-UCCCg -5'
29156 5' -55.6 NC_006146.1 + 44476 0.71 0.687971
Target:  5'- gCAGGAAGcGuGGC-CUGUGCCGugcucgcgaccccGGGCg -3'
miRNA:   3'- gGUCUUUCaC-CCGuGACACGGU-------------CCCG- -5'
29156 5' -55.6 NC_006146.1 + 139720 0.71 0.688979
Target:  5'- --cGAGGGUGGGCugUGUGguuaCCAGGa- -3'
miRNA:   3'- gguCUUUCACCCGugACAC----GGUCCcg -5'
29156 5' -55.6 NC_006146.1 + 41599 0.71 0.688979
Target:  5'- gCGGAGAGgcccgGGGgGCUGguccgcuggGCCcGGGCg -3'
miRNA:   3'- gGUCUUUCa----CCCgUGACa--------CGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 60131 0.71 0.688979
Target:  5'- gCCGGGGgagggaccuGGUGGGgGgugUGUGCCAGGGg -3'
miRNA:   3'- -GGUCUU---------UCACCCgUg--ACACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 155216 0.71 0.688979
Target:  5'- cCCGugauGAAGGUGuacaGGCugUGgGUCAGGGCg -3'
miRNA:   3'- -GGU----CUUUCAC----CCGugACaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 162402 0.71 0.709019
Target:  5'- cCUGGGAguaacaaguGGUGGGCACgg-GCUAGGGg -3'
miRNA:   3'- -GGUCUU---------UCACCCGUGacaCGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 77544 0.71 0.709019
Target:  5'- aCCGGGccacGUGuacguGGCGCUGU-CCAGGGCc -3'
miRNA:   3'- -GGUCUuu--CAC-----CCGUGACAcGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 44767 0.71 0.718947
Target:  5'- uCgGGGGAGaGGGUGCcGUGCC-GGGCu -3'
miRNA:   3'- -GgUCUUUCaCCCGUGaCACGGuCCCG- -5'
29156 5' -55.6 NC_006146.1 + 166493 0.71 0.722898
Target:  5'- gCUAGAAucgcagcguggugccAGUcGGGCgGCUGUGCCaAGcGGCa -3'
miRNA:   3'- -GGUCUU---------------UCA-CCCG-UGACACGG-UC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.