miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 5' -55.6 NC_006146.1 + 168078 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 168772 0.68 0.857067
Target:  5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3'
miRNA:   3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 167840 0.68 0.857067
Target:  5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3'
miRNA:   3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5'
29156 5' -55.6 NC_006146.1 + 41711 0.7 0.74825
Target:  5'- gCGGggGGUGcGGCGCUGUgGCCuuuuGCa -3'
miRNA:   3'- gGUCuuUCAC-CCGUGACA-CGGucc-CG- -5'
29156 5' -55.6 NC_006146.1 + 129120 0.72 0.658588
Target:  5'- gCCuGAGAGcGGGCGCccggGCgCAGGGCc -3'
miRNA:   3'- -GGuCUUUCaCCCGUGaca-CG-GUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 106518 0.67 0.883471
Target:  5'- gUCAGAcAGGUGGGCGCauccCCugguGGGCa -3'
miRNA:   3'- -GGUCU-UUCACCCGUGacacGGu---CCCG- -5'
29156 5' -55.6 NC_006146.1 + 53464 0.68 0.861657
Target:  5'- cCCGGGAGGcgcGGGUGCcucgucgGUCAGGGCc -3'
miRNA:   3'- -GGUCUUUCa--CCCGUGaca----CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 44307 0.73 0.577195
Target:  5'- aCCGGu-AGUGGGgGCUGggGCCGuGGCa -3'
miRNA:   3'- -GGUCuuUCACCCgUGACa-CGGUcCCG- -5'
29156 5' -55.6 NC_006146.1 + 139063 0.69 0.821277
Target:  5'- cCCAGAGGGcGGaaGCUGgacuuugGCCAcGGGCc -3'
miRNA:   3'- -GGUCUUUCaCCcgUGACa------CGGU-CCCG- -5'
29156 5' -55.6 NC_006146.1 + 149943 0.69 0.810041
Target:  5'- cUCGGGguuGAG-GGGCGCccaggcguugggagUGgggGCCAGGGCc -3'
miRNA:   3'- -GGUCU---UUCaCCCGUG--------------ACa--CGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 51165 0.74 0.557095
Target:  5'- gUCGGA--GUGGGCugUGgaGCCGGGGa -3'
miRNA:   3'- -GGUCUuuCACCCGugACa-CGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 96950 0.74 0.527344
Target:  5'- uCCGcGAGucUGGGCGCcaggGUGUCGGGGCa -3'
miRNA:   3'- -GGU-CUUucACCCGUGa---CACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 169488 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 167624 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 66138 0.68 0.846076
Target:  5'- -gGGAAuuuGUccucGGGCacaGCUGuUGCCAGGGUg -3'
miRNA:   3'- ggUCUUu--CA----CCCG---UGAC-ACGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 60131 0.71 0.688979
Target:  5'- gCCGGGGgagggaccuGGUGGGgGgugUGUGCCAGGGg -3'
miRNA:   3'- -GGUCUU---------UCACCCgUg--ACACGGUCCCg -5'
29156 5' -55.6 NC_006146.1 + 44476 0.71 0.687971
Target:  5'- gCAGGAAGcGuGGC-CUGUGCCGugcucgcgaccccGGGCg -3'
miRNA:   3'- gGUCUUUCaC-CCGuGACACGGU-------------CCCG- -5'
29156 5' -55.6 NC_006146.1 + 95518 0.74 0.516582
Target:  5'- uCCGGGAgcugucgGGUGcGGCGcCUG-GCCAGGGUc -3'
miRNA:   3'- -GGUCUU-------UCAC-CCGU-GACaCGGUCCCG- -5'
29156 5' -55.6 NC_006146.1 + 65451 0.69 0.794942
Target:  5'- -gAGGAGGUGGGCACgaccacGCUggcGGGCu -3'
miRNA:   3'- ggUCUUUCACCCGUGaca---CGGu--CCCG- -5'
29156 5' -55.6 NC_006146.1 + 4669 0.68 0.837993
Target:  5'- cCUGGGccGGGUGGGCGag--GCgGGGGCa -3'
miRNA:   3'- -GGUCU--UUCACCCGUgacaCGgUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.