miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29166 3' -53.3 NC_006150.1 + 132641 0.66 0.992017
Target:  5'- cCCA--AUUACCGUCAGUU---GGAGCu -3'
miRNA:   3'- -GGUcuUAGUGGCAGUCGGuguCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 181901 0.66 0.9909
Target:  5'- aCUAG--UCAUCaGUCAgGCCGaGGGAGCg -3'
miRNA:   3'- -GGUCuuAGUGG-CAGU-CGGUgUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 119886 0.66 0.9909
Target:  5'- aCGGGAUCGCUacagcauggccuGUUuGCCGCGGGAc- -3'
miRNA:   3'- gGUCUUAGUGG------------CAGuCGGUGUCCUcg -5'
29166 3' -53.3 NC_006150.1 + 88240 0.66 0.9909
Target:  5'- uCCAGGGagcgGCCGcgCAGCCcugGCGGGGGg -3'
miRNA:   3'- -GGUCUUag--UGGCa-GUCGG---UGUCCUCg -5'
29166 3' -53.3 NC_006150.1 + 183515 0.66 0.9909
Target:  5'- gCGGAuUCugCGUgGGCUccgguGCGGGGuGCg -3'
miRNA:   3'- gGUCUuAGugGCAgUCGG-----UGUCCU-CG- -5'
29166 3' -53.3 NC_006150.1 + 86012 0.66 0.989664
Target:  5'- aCAGGuagGCgGcCGGCCccACGGGAGCa -3'
miRNA:   3'- gGUCUuagUGgCaGUCGG--UGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 107674 0.66 0.989664
Target:  5'- uUCGaGGUCGuugUgGUCGGCCGCuggGGGAGCg -3'
miRNA:   3'- -GGUcUUAGU---GgCAGUCGGUG---UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 77044 0.66 0.989664
Target:  5'- aCCGGggUaAUCGUCAGagCAUAGGccauGCg -3'
miRNA:   3'- -GGUCuuAgUGGCAGUCg-GUGUCCu---CG- -5'
29166 3' -53.3 NC_006150.1 + 55297 0.66 0.9883
Target:  5'- aCCAGAAUCugaACCGUacCGGUgGgacaAGGGGCc -3'
miRNA:   3'- -GGUCUUAG---UGGCA--GUCGgUg---UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 23285 0.66 0.9883
Target:  5'- uCUAaAAUCACCGUCuccaccccGUC-CAGGGGCc -3'
miRNA:   3'- -GGUcUUAGUGGCAGu-------CGGuGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 208143 0.66 0.9868
Target:  5'- cUCGGGGccCGCCGUUAGgcggaCACuGGGAGCa -3'
miRNA:   3'- -GGUCUUa-GUGGCAGUCg----GUG-UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 186007 0.66 0.9868
Target:  5'- aCCGGGAUaacauUCGUCGGUCACAuGAGa -3'
miRNA:   3'- -GGUCUUAgu---GGCAGUCGGUGUcCUCg -5'
29166 3' -53.3 NC_006150.1 + 160494 0.66 0.9868
Target:  5'- gCCAGGAaUAgCGUCA-CCACcuggcaAGGAGCc -3'
miRNA:   3'- -GGUCUUaGUgGCAGUcGGUG------UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 32332 0.66 0.9868
Target:  5'- gCGGAAUCACgGuaacuaccuUCAGCUGCcuuauccugaGGGGGCc -3'
miRNA:   3'- gGUCUUAGUGgC---------AGUCGGUG----------UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 72884 0.66 0.985157
Target:  5'- aCCGGggUCAUgG-CAaCCACGGGAc- -3'
miRNA:   3'- -GGUCuuAGUGgCaGUcGGUGUCCUcg -5'
29166 3' -53.3 NC_006150.1 + 88652 0.66 0.985157
Target:  5'- cCCAGcgcgGCCGUCcGCgCACcgcaGGGAGCa -3'
miRNA:   3'- -GGUCuuagUGGCAGuCG-GUG----UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 81103 0.66 0.985157
Target:  5'- uCCAGAAacUCGuuGUCuuCguCGGGAGCc -3'
miRNA:   3'- -GGUCUU--AGUggCAGucGguGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 216081 0.67 0.983362
Target:  5'- cUguGAgAUCACCGUUGGCaaagACAGcGGGCu -3'
miRNA:   3'- -GguCU-UAGUGGCAGUCGg---UGUC-CUCG- -5'
29166 3' -53.3 NC_006150.1 + 91136 0.67 0.981408
Target:  5'- cCCAGGcugcuUCGCCG-CAaCCACAGcAGCa -3'
miRNA:   3'- -GGUCUu----AGUGGCaGUcGGUGUCcUCG- -5'
29166 3' -53.3 NC_006150.1 + 88487 0.67 0.979286
Target:  5'- gCCAGGG-CugCG-CGGCCGCucccuGGAGa -3'
miRNA:   3'- -GGUCUUaGugGCaGUCGGUGu----CCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.