miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29170 5' -56 NC_006150.1 + 135777 0.73 0.588629
Target:  5'- cCACCACCGCGGCGGCA-CCau-GGCGa -3'
miRNA:   3'- -GUGGUGGUGUCGUUGUcGGcguUCGC- -5'
29170 5' -56 NC_006150.1 + 154568 0.73 0.62892
Target:  5'- uCACUugCugAGCGaugagcacgGCGGCCGCGAGgGc -3'
miRNA:   3'- -GUGGugGugUCGU---------UGUCGGCGUUCgC- -5'
29170 5' -56 NC_006150.1 + 130516 0.73 0.588629
Target:  5'- aGCgGCgGCAGCAGCAGCaGCA-GCGg -3'
miRNA:   3'- gUGgUGgUGUCGUUGUCGgCGUuCGC- -5'
29170 5' -56 NC_006150.1 + 65809 0.73 0.618825
Target:  5'- gGCCACCACGGCAGa----GCGAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGUUgucggCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 180909 0.73 0.618825
Target:  5'- gCGCgGCCACAGCGacuuGCGGuuGCGgugacGGCGg -3'
miRNA:   3'- -GUGgUGGUGUCGU----UGUCggCGU-----UCGC- -5'
29170 5' -56 NC_006150.1 + 88670 0.72 0.679273
Target:  5'- aGCCggaACCGCGGCAgacccagcGCGGCCGUccGCGc -3'
miRNA:   3'- gUGG---UGGUGUCGU--------UGUCGGCGuuCGC- -5'
29170 5' -56 NC_006150.1 + 85932 0.72 0.689263
Target:  5'- aAUCACCACuGGCGucgaACGGUCGCAcAGCGa -3'
miRNA:   3'- gUGGUGGUG-UCGU----UGUCGGCGU-UCGC- -5'
29170 5' -56 NC_006150.1 + 72119 0.72 0.679273
Target:  5'- aGCCGCCGCuGUAGCAGCaGCAAcuGCu -3'
miRNA:   3'- gUGGUGGUGuCGUUGUCGgCGUU--CGc -5'
29170 5' -56 NC_006150.1 + 124620 0.71 0.738348
Target:  5'- gCAUCACCGCaugcacaaaaagAGCAaggcgGCGGCgGCGGGCGc -3'
miRNA:   3'- -GUGGUGGUG------------UCGU-----UGUCGgCGUUCGC- -5'
29170 5' -56 NC_006150.1 + 73694 0.71 0.738348
Target:  5'- gACuCGCa--AGCGGCGGCCGCGAcGCGg -3'
miRNA:   3'- gUG-GUGgugUCGUUGUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 63916 0.71 0.709097
Target:  5'- uCACCACUcaGCAGCAagaACAGguCCaGCAGGCGc -3'
miRNA:   3'- -GUGGUGG--UGUCGU---UGUC--GG-CGUUCGC- -5'
29170 5' -56 NC_006150.1 + 157632 0.71 0.699207
Target:  5'- gCACCACCcucaGCAGCAAUAGCaGCcccAGCa -3'
miRNA:   3'- -GUGGUGG----UGUCGUUGUCGgCGu--UCGc -5'
29170 5' -56 NC_006150.1 + 69402 0.71 0.738348
Target:  5'- gCACCACCACGGUGG-AGUCGCAcguccgcgccgAGCa -3'
miRNA:   3'- -GUGGUGGUGUCGUUgUCGGCGU-----------UCGc -5'
29170 5' -56 NC_006150.1 + 75525 0.71 0.738348
Target:  5'- uGCUAUCGCGGUGucACGGCCGCAgcucucauugAGCGc -3'
miRNA:   3'- gUGGUGGUGUCGU--UGUCGGCGU----------UCGC- -5'
29170 5' -56 NC_006150.1 + 118779 0.71 0.718923
Target:  5'- uCACgGCCuccgGGCAGCAGCUGCGAGg- -3'
miRNA:   3'- -GUGgUGGug--UCGUUGUCGGCGUUCgc -5'
29170 5' -56 NC_006150.1 + 89588 0.7 0.80304
Target:  5'- uCACUGCCACAGCcgucgacgauCGGUCGCGGuGCGc -3'
miRNA:   3'- -GUGGUGGUGUCGuu--------GUCGGCGUU-CGC- -5'
29170 5' -56 NC_006150.1 + 35962 0.7 0.794182
Target:  5'- gCugCACaCGCAGCugcucAGCAGCUGuCAGGUGa -3'
miRNA:   3'- -GugGUG-GUGUCG-----UUGUCGGC-GUUCGC- -5'
29170 5' -56 NC_006150.1 + 2167 0.7 0.785182
Target:  5'- aCAcCCGCaACGGCAcCAGCCGcCAGGCc -3'
miRNA:   3'- -GU-GGUGgUGUCGUuGUCGGC-GUUCGc -5'
29170 5' -56 NC_006150.1 + 107392 0.7 0.776049
Target:  5'- uCGCCACCGuCGGCucACAGuaGCAAGUc -3'
miRNA:   3'- -GUGGUGGU-GUCGu-UGUCggCGUUCGc -5'
29170 5' -56 NC_006150.1 + 76828 0.7 0.80304
Target:  5'- gCGCCACuCAUAGC-GguGCCGCA-GCa -3'
miRNA:   3'- -GUGGUG-GUGUCGuUguCGGCGUuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.