miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29193 3' -57.9 NC_006150.1 + 135775 0.66 0.907561
Target:  5'- ---aCCAcCGCGGCG-GCACCAUGgCGa -3'
miRNA:   3'- cuacGGU-GUGCCGCaCGUGGUGUgGC- -5'
29193 3' -57.9 NC_006150.1 + 49606 0.66 0.907561
Target:  5'- uGAUGgCAUAUGGC-UGCAUCGCAgUGc -3'
miRNA:   3'- -CUACgGUGUGCCGcACGUGGUGUgGC- -5'
29193 3' -57.9 NC_006150.1 + 141133 0.66 0.907561
Target:  5'- ---aCCGCgaGCGGCGUGUGCCcuGCAUCa -3'
miRNA:   3'- cuacGGUG--UGCCGCACGUGG--UGUGGc -5'
29193 3' -57.9 NC_006150.1 + 204947 0.66 0.901532
Target:  5'- --aGCUGgAUGGCGUaCACCGCuCCGa -3'
miRNA:   3'- cuaCGGUgUGCCGCAcGUGGUGuGGC- -5'
29193 3' -57.9 NC_006150.1 + 70287 0.66 0.895287
Target:  5'- --cGCUcgugGCGGCGcUGCGCCgucACGCCGg -3'
miRNA:   3'- cuaCGGug--UGCCGC-ACGUGG---UGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 74905 0.66 0.888826
Target:  5'- cGUGCgcgaGCACGGgGUGCcgauUCAUGCCGa -3'
miRNA:   3'- cUACGg---UGUGCCgCACGu---GGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 110856 0.66 0.882155
Target:  5'- cGAUGCCGCuguccaGGCGUuugcccaaggGUAUCAUACCc -3'
miRNA:   3'- -CUACGGUGug----CCGCA----------CGUGGUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 120582 0.66 0.882155
Target:  5'- --aGCUACAacggcCGGCGUGacgACC-CACCGa -3'
miRNA:   3'- cuaCGGUGU-----GCCGCACg--UGGuGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 200927 0.66 0.882155
Target:  5'- -uUGUUACuGCGGCGUGCACgACgaGCUa -3'
miRNA:   3'- cuACGGUG-UGCCGCACGUGgUG--UGGc -5'
29193 3' -57.9 NC_006150.1 + 70786 0.66 0.881476
Target:  5'- --cGCCA-GCGaGCGcaccccuUGCGCCGCACUGa -3'
miRNA:   3'- cuaCGGUgUGC-CGC-------ACGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 84639 0.67 0.860914
Target:  5'- aGUGCCAguuCGaGCGUGgACCGCACg- -3'
miRNA:   3'- cUACGGUgu-GC-CGCACgUGGUGUGgc -5'
29193 3' -57.9 NC_006150.1 + 135662 0.67 0.860914
Target:  5'- ---uCCGCGCGGCGaaacUGCACUACuCCu -3'
miRNA:   3'- cuacGGUGUGCCGC----ACGUGGUGuGGc -5'
29193 3' -57.9 NC_006150.1 + 92416 0.67 0.860176
Target:  5'- -cUGCUGCgguugaugaugguGCGGCGUGCACgC-CGCCu -3'
miRNA:   3'- cuACGGUG-------------UGCCGCACGUG-GuGUGGc -5'
29193 3' -57.9 NC_006150.1 + 142576 0.67 0.853441
Target:  5'- aGAUGUCGCGaaaGGuCGUGUAaauCUGCACCGu -3'
miRNA:   3'- -CUACGGUGUg--CC-GCACGU---GGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 109248 0.67 0.845781
Target:  5'- --cGCUgcGCACGgacGCGUGCaACUACGCCa -3'
miRNA:   3'- cuaCGG--UGUGC---CGCACG-UGGUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 71209 0.67 0.845781
Target:  5'- --aGCCGCaaGCGGC-UGCACU-CGCCGc -3'
miRNA:   3'- cuaCGGUG--UGCCGcACGUGGuGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 122227 0.67 0.845781
Target:  5'- uAUGCaugauCAgGGCG-GCAUCACGCCa -3'
miRNA:   3'- cUACGgu---GUgCCGCaCGUGGUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 189170 0.67 0.845781
Target:  5'- aAUGUCGagaAUGcGCGUGCGCCAUcCCGu -3'
miRNA:   3'- cUACGGUg--UGC-CGCACGUGGUGuGGC- -5'
29193 3' -57.9 NC_006150.1 + 70018 0.68 0.829924
Target:  5'- -uUGCCGCAaggcacgggucCGGCGUgacgGCGCaGCGCCGc -3'
miRNA:   3'- cuACGGUGU-----------GCCGCA----CGUGgUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 69660 0.68 0.829924
Target:  5'- -cUGCUcgGCGCGGaCGUGCgACUcCACCGu -3'
miRNA:   3'- cuACGG--UGUGCC-GCACG-UGGuGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.