miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29195 5' -52 NC_006150.1 + 111674 1.12 0.006923
Target:  5'- gCGCAGCAAACAUCGCGUCACCAAGGCc -3'
miRNA:   3'- -GCGUCGUUUGUAGCGCAGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 68219 0.67 0.989844
Target:  5'- gCGCAGCAcaccggaacgccgAACAcccaggauccuaaCGCGUaauCCAGGGCg -3'
miRNA:   3'- -GCGUCGU-------------UUGUa------------GCGCAgu-GGUUCCG- -5'
29195 5' -52 NC_006150.1 + 175138 0.67 0.990479
Target:  5'- uCGCGcGCAAACAcauacCGaUGUCGCaGAGGCa -3'
miRNA:   3'- -GCGU-CGUUUGUa----GC-GCAGUGgUUCCG- -5'
29195 5' -52 NC_006150.1 + 3043 0.66 0.995927
Target:  5'- aCGCAGCAGugGagCGC-UCAgCAgcaggaggAGGCa -3'
miRNA:   3'- -GCGUCGUUugUa-GCGcAGUgGU--------UCCG- -5'
29195 5' -52 NC_006150.1 + 992 0.73 0.858883
Target:  5'- gCGCAGCGAGCGccacaCGCGg-GCCGGGGg -3'
miRNA:   3'- -GCGUCGUUUGUa----GCGCagUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 202491 0.73 0.866496
Target:  5'- aGCAGCGAGaugaGCGUC-CCGAGGa -3'
miRNA:   3'- gCGUCGUUUguagCGCAGuGGUUCCg -5'
29195 5' -52 NC_006150.1 + 88591 0.71 0.929697
Target:  5'- uCGCAGguGgggGCGUCGCGagGCCcagcuggggugcaGGGGCg -3'
miRNA:   3'- -GCGUCguU---UGUAGCGCagUGG-------------UUCCG- -5'
29195 5' -52 NC_006150.1 + 88662 0.69 0.964167
Target:  5'- cCGCGGCAGACccagCGCGgccguccgcgCACCGcAGGg -3'
miRNA:   3'- -GCGUCGUUUGua--GCGCa---------GUGGU-UCCg -5'
29195 5' -52 NC_006150.1 + 83592 0.67 0.985993
Target:  5'- uGgGGgAGACAcccaauuUCGCGUCACC--GGCu -3'
miRNA:   3'- gCgUCgUUUGU-------AGCGCAGUGGuuCCG- -5'
29195 5' -52 NC_006150.1 + 31617 0.67 0.989177
Target:  5'- uGuCGGC-AGCAUC-UG-CACCAAGGCu -3'
miRNA:   3'- gC-GUCGuUUGUAGcGCaGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 55215 0.67 0.98774
Target:  5'- aGCAGaGGGCGguggCG-GUCACCAauucAGGCg -3'
miRNA:   3'- gCGUCgUUUGUa---GCgCAGUGGU----UCCG- -5'
29195 5' -52 NC_006150.1 + 1915 0.68 0.980477
Target:  5'- gCGgAGCGcuuCGUCGgccUGUCGCCGAGGg -3'
miRNA:   3'- -GCgUCGUuu-GUAGC---GCAGUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 85315 0.81 0.45444
Target:  5'- aCGCcGCGGAcCAUCGCGagcUCAUCAAGGCg -3'
miRNA:   3'- -GCGuCGUUU-GUAGCGC---AGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 92450 0.67 0.98774
Target:  5'- aGCGGCGAggagGCGgugacCGUGUCGCC--GGCc -3'
miRNA:   3'- gCGUCGUU----UGUa----GCGCAGUGGuuCCG- -5'
29195 5' -52 NC_006150.1 + 75847 0.75 0.763125
Target:  5'- aGCGGCGAGCGguUCGCGagACCAugAGGa -3'
miRNA:   3'- gCGUCGUUUGU--AGCGCagUGGU--UCCg -5'
29195 5' -52 NC_006150.1 + 185716 0.69 0.971552
Target:  5'- uCGCAGCAAAguUCaGCGUCcauguucguauguucGgCGAGGUg -3'
miRNA:   3'- -GCGUCGUUUguAG-CGCAG---------------UgGUUCCG- -5'
29195 5' -52 NC_006150.1 + 41369 0.67 0.989177
Target:  5'- gCGUAGCGAAUGUCGaucuccacCGUCuGCCGAGcGUu -3'
miRNA:   3'- -GCGUCGUUUGUAGC--------GCAG-UGGUUC-CG- -5'
29195 5' -52 NC_006150.1 + 194886 0.67 0.990479
Target:  5'- uGCGGCAGugGagGCGUauaaguaACCAcGGGUa -3'
miRNA:   3'- gCGUCGUUugUagCGCAg------UGGU-UCCG- -5'
29195 5' -52 NC_006150.1 + 57172 0.73 0.851063
Target:  5'- uGCAGguG-CuUCGCacccugGUCACCGAGGCg -3'
miRNA:   3'- gCGUCguUuGuAGCG------CAGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 80608 0.71 0.913568
Target:  5'- aGUGGCcucuAAUuUUGCGUCACgAAGGCa -3'
miRNA:   3'- gCGUCGu---UUGuAGCGCAGUGgUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.