miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29197 5' -43.8 NC_006150.1 + 152750 0.67 1
Target:  5'- --aGUCAGCGccGCGug--UGGCAACGCc -3'
miRNA:   3'- aaaCAGUUGC--UGUucuaAUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 113996 0.67 1
Target:  5'- -aUGUCugaGuCGGGGUUGGCGACGg -3'
miRNA:   3'- aaACAGuugCuGUUCUAAUCGUUGUg -5'
29197 5' -43.8 NC_006150.1 + 112330 0.67 1
Target:  5'- --cGUCGGCGACcguGGU--GCGGCGCu -3'
miRNA:   3'- aaaCAGUUGCUGuu-CUAauCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 35325 0.67 1
Target:  5'- cUUG-CGGCGACAAcGGUUGGCGuuguUACu -3'
miRNA:   3'- aAACaGUUGCUGUU-CUAAUCGUu---GUG- -5'
29197 5' -43.8 NC_006150.1 + 109347 0.66 1
Target:  5'- -gUGUCAAUGACGuGAUccGCAaAUACa -3'
miRNA:   3'- aaACAGUUGCUGUuCUAauCGU-UGUG- -5'
29197 5' -43.8 NC_006150.1 + 72710 0.66 1
Target:  5'- --aGUCAuggGCGACGAGAU-GGUAccguACGCc -3'
miRNA:   3'- aaaCAGU---UGCUGUUCUAaUCGU----UGUG- -5'
29197 5' -43.8 NC_006150.1 + 115444 0.66 1
Target:  5'- --gGUCGugGA-GAGAaugGGCAGCGCc -3'
miRNA:   3'- aaaCAGUugCUgUUCUaa-UCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 27121 0.66 1
Target:  5'- --cGUCuGCGAUAcucgUGGCGGCACu -3'
miRNA:   3'- aaaCAGuUGCUGUucuaAUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 131859 0.66 1
Target:  5'- --gGUCGAaaGGCAGGGUgaUAGCAcucGCGCa -3'
miRNA:   3'- aaaCAGUUg-CUGUUCUA--AUCGU---UGUG- -5'
29197 5' -43.8 NC_006150.1 + 166767 0.66 1
Target:  5'- ---aUUAACGGCAGGcgaaUAGCAACAg -3'
miRNA:   3'- aaacAGUUGCUGUUCua--AUCGUUGUg -5'
29197 5' -43.8 NC_006150.1 + 41419 0.67 1
Target:  5'- --aGUCuucguACGGC-AGGUUGGCGAC-Ca -3'
miRNA:   3'- aaaCAGu----UGCUGuUCUAAUCGUUGuG- -5'
29197 5' -43.8 NC_006150.1 + 56455 0.66 1
Target:  5'- --cGUCGACGAUgcGAUcccgGGCGGCcCa -3'
miRNA:   3'- aaaCAGUUGCUGuuCUAa---UCGUUGuG- -5'
29197 5' -43.8 NC_006150.1 + 181511 0.65 1
Target:  5'- gUUGUCcgauacggcagagAAgGACGAGAUUaaGGCGuACACa -3'
miRNA:   3'- aAACAG-------------UUgCUGUUCUAA--UCGU-UGUG- -5'
29197 5' -43.8 NC_006150.1 + 105288 0.67 1
Target:  5'- --aGUCGAC-ACGAGAUgGGCAuuuuCACu -3'
miRNA:   3'- aaaCAGUUGcUGUUCUAaUCGUu---GUG- -5'
29197 5' -43.8 NC_006150.1 + 69311 0.66 1
Target:  5'- -cUGUCu-CGAUAcucuccGGAcUGGCAGCGCg -3'
miRNA:   3'- aaACAGuuGCUGU------UCUaAUCGUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 219758 0.67 0.999999
Target:  5'- --cGgCGGCGGCAGGAccUGGCGugGCc -3'
miRNA:   3'- aaaCaGUUGCUGUUCUa-AUCGUugUG- -5'
29197 5' -43.8 NC_006150.1 + 196706 0.68 0.999999
Target:  5'- -aUGUCAACacACAAG-UUAGcCAGCACc -3'
miRNA:   3'- aaACAGUUGc-UGUUCuAAUC-GUUGUG- -5'
29197 5' -43.8 NC_006150.1 + 1214 0.68 0.999999
Target:  5'- -gUGUUGugGAgAGGGUUGGguGCAg -3'
miRNA:   3'- aaACAGUugCUgUUCUAAUCguUGUg -5'
29197 5' -43.8 NC_006150.1 + 70545 0.68 0.999997
Target:  5'- cUUGUCggUGACaAAGAguuGCAggGCGCa -3'
miRNA:   3'- aAACAGuuGCUG-UUCUaauCGU--UGUG- -5'
29197 5' -43.8 NC_006150.1 + 209822 0.68 0.999997
Target:  5'- --cGUUucACGACGAGcacgcugAGCAGCACa -3'
miRNA:   3'- aaaCAGu-UGCUGUUCuaa----UCGUUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.