Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2920 | 3' | -57 | NC_001493.1 | + | 70532 | 0.66 | 0.850565 |
Target: 5'- aUCCCCGCccgGGCCuuGCACAgcuugaucUCGUCGcCCa -3' miRNA: 3'- -GGGGGUG---CUGGu-CGUGU--------AGUAGCcGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 103528 | 0.66 | 0.883013 |
Target: 5'- aCCCCGCGACCccGguCGUCAacaccgggugucccaUUGGUg -3' miRNA: 3'- gGGGGUGCUGGu-CguGUAGU---------------AGCCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 64583 | 0.66 | 0.850565 |
Target: 5'- gCgCCCGUGGCgAGUACAUC-UCGGUg -3' miRNA: 3'- -GgGGGUGCUGgUCGUGUAGuAGCCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 13052 | 0.66 | 0.849782 |
Target: 5'- gUCCCCGgGGucaaCAGCugguggagcgaguGCGUC-UCGGCCa -3' miRNA: 3'- -GGGGGUgCUg---GUCG-------------UGUAGuAGCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 27618 | 0.66 | 0.880231 |
Target: 5'- -aCCCGCG-CgGGCuCGggAUCGGCCc -3' miRNA: 3'- ggGGGUGCuGgUCGuGUagUAGCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 128606 | 0.66 | 0.849782 |
Target: 5'- gUCCCCGgGGucaaCAGCugguggagcgaguGCGUC-UCGGCCa -3' miRNA: 3'- -GGGGGUgCUg---GUCG-------------UGUAGuAGCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 107963 | 0.66 | 0.849782 |
Target: 5'- aCCCCCcguguccGCGGUCAGCcuCAUCG-CGGCg -3' miRNA: 3'- -GGGGG-------UGCUGGUCGu-GUAGUaGCCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 30340 | 0.66 | 0.850565 |
Target: 5'- uCCCCC-CGACCAGgGCcccgaguUCGUCGa-- -3' miRNA: 3'- -GGGGGuGCUGGUCgUGu------AGUAGCcgg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 11028 | 0.66 | 0.858288 |
Target: 5'- gCUUCACG-CCAGC-CGUCAUCccgagGGCUc -3' miRNA: 3'- gGGGGUGCuGGUCGuGUAGUAG-----CCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 12240 | 0.66 | 0.86581 |
Target: 5'- aUCCCCAUGAUgAGCG-AUCG-CGGgCg -3' miRNA: 3'- -GGGGGUGCUGgUCGUgUAGUaGCCgG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 109121 | 0.66 | 0.873126 |
Target: 5'- -gCCCAUGcCCA-CAUGUCAgccucgCGGCCa -3' miRNA: 3'- ggGGGUGCuGGUcGUGUAGUa-----GCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 65172 | 0.66 | 0.858288 |
Target: 5'- gCCCgCGCGAaCGGCACG-CcgCGGUUg -3' miRNA: 3'- -GGGgGUGCUgGUCGUGUaGuaGCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 53413 | 0.66 | 0.858288 |
Target: 5'- -aUCC-CGACCAucGCACGgaguUCGGCCu -3' miRNA: 3'- ggGGGuGCUGGU--CGUGUagu-AGCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 64772 | 0.66 | 0.860566 |
Target: 5'- gCCCUCugGACgaucacgCGGCGCAccccgguuaucgcgcUCGUCGcaGCCg -3' miRNA: 3'- -GGGGGugCUG-------GUCGUGU---------------AGUAGC--CGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 77950 | 0.66 | 0.858288 |
Target: 5'- aCCCCCucguCGAUCAcGCGCuaCAg-GGCCa -3' miRNA: 3'- -GGGGGu---GCUGGU-CGUGuaGUagCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 26636 | 0.66 | 0.87953 |
Target: 5'- gCCCCCAagcgacuggugcuCGACgAGCAgGUgGUCGacgauuacccuGCCg -3' miRNA: 3'- -GGGGGU-------------GCUGgUCGUgUAgUAGC-----------CGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 53263 | 0.66 | 0.878122 |
Target: 5'- aCCCgCUucuucucgaccgaaGCGGCCAGUACAUCcaagaGGCg -3' miRNA: 3'- -GGG-GG--------------UGCUGGUCGUGUAGuag--CCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 72082 | 0.66 | 0.868761 |
Target: 5'- aCCCCACGucguCCAugaACAUCAccuucccgaucgucaUCGGCa -3' miRNA: 3'- gGGGGUGCu---GGUcg-UGUAGU---------------AGCCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 127794 | 0.66 | 0.86581 |
Target: 5'- aUCCCCAUGAUgAGCG-AUCG-CGGgCg -3' miRNA: 3'- -GGGGGUGCUGgUCGUgUAGUaGCCgG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 100790 | 0.66 | 0.873126 |
Target: 5'- cCCCCCugGACacaCAGU--GUCGUucCGGCg -3' miRNA: 3'- -GGGGGugCUG---GUCGugUAGUA--GCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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