miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2920 3' -57 NC_001493.1 + 46984 1.14 0.001155
Target:  5'- aCCCCCACGACCAGCACAUCAUCGGCCu -3'
miRNA:   3'- -GGGGGUGCUGGUCGUGUAGUAGCCGG- -5'
2920 3' -57 NC_001493.1 + 50438 0.87 0.07502
Target:  5'- -gCCCACGACC-GCACAcCAUCGGCCa -3'
miRNA:   3'- ggGGGUGCUGGuCGUGUaGUAGCCGG- -5'
2920 3' -57 NC_001493.1 + 3095 0.76 0.341748
Target:  5'- aCCCCCGcCGACCuGGCugGUaa-CGGCCu -3'
miRNA:   3'- -GGGGGU-GCUGG-UCGugUAguaGCCGG- -5'
2920 3' -57 NC_001493.1 + 118649 0.76 0.341748
Target:  5'- aCCCCCGcCGACCuGGCugGUaa-CGGCCu -3'
miRNA:   3'- -GGGGGU-GCUGG-UCGugUAguaGCCGG- -5'
2920 3' -57 NC_001493.1 + 28586 0.75 0.365026
Target:  5'- gCUCCAgCGGCCGuGCGCAUC-UCGGUCg -3'
miRNA:   3'- gGGGGU-GCUGGU-CGUGUAGuAGCCGG- -5'
2920 3' -57 NC_001493.1 + 84423 0.75 0.389377
Target:  5'- uCCCCgACGACCAGUGgAUCGgugaGGCUc -3'
miRNA:   3'- -GGGGgUGCUGGUCGUgUAGUag--CCGG- -5'
2920 3' -57 NC_001493.1 + 102052 0.74 0.450153
Target:  5'- gUCCCCGCGAgC-GCGC-UCAUCaGCCa -3'
miRNA:   3'- -GGGGGUGCUgGuCGUGuAGUAGcCGG- -5'
2920 3' -57 NC_001493.1 + 94385 0.73 0.476818
Target:  5'- aCCUCCACGACCaauaacuGGguCGUCAUCGcggagaacaGCCg -3'
miRNA:   3'- -GGGGGUGCUGG-------UCguGUAGUAGC---------CGG- -5'
2920 3' -57 NC_001493.1 + 108474 0.73 0.477752
Target:  5'- cUCCCCACcACCuuauguAGCACGaUGUCGGCCc -3'
miRNA:   3'- -GGGGGUGcUGG------UCGUGUaGUAGCCGG- -5'
2920 3' -57 NC_001493.1 + 116374 0.73 0.495656
Target:  5'- gCCCCCAaugucaaacUGACCGGCGCAcgucaugaagccaUCAUCaucGCCg -3'
miRNA:   3'- -GGGGGU---------GCUGGUCGUGU-------------AGUAGc--CGG- -5'
2920 3' -57 NC_001493.1 + 820 0.73 0.495656
Target:  5'- gCCCCCAaugucaaacUGACCGGCGCAcgucaugaagccaUCAUCaucGCCg -3'
miRNA:   3'- -GGGGGU---------GCUGGUCGUGU-------------AGUAGc--CGG- -5'
2920 3' -57 NC_001493.1 + 61371 0.73 0.50616
Target:  5'- uCCCCCGCuuGGCCGGUGCGgcgaaggguagCGUCGGUUg -3'
miRNA:   3'- -GGGGGUG--CUGGUCGUGUa----------GUAGCCGG- -5'
2920 3' -57 NC_001493.1 + 45197 0.72 0.512893
Target:  5'- gUCCCCAUGACCGccgggugcugcgcGCAUAUCGaggugagccgcgCGGCCu -3'
miRNA:   3'- -GGGGGUGCUGGU-------------CGUGUAGUa-----------GCCGG- -5'
2920 3' -57 NC_001493.1 + 111562 0.72 0.51579
Target:  5'- gUCUCCGCGAgCAGCGCGUCAaaguccccgaCGGUCc -3'
miRNA:   3'- -GGGGGUGCUgGUCGUGUAGUa---------GCCGG- -5'
2920 3' -57 NC_001493.1 + 114306 0.72 0.525494
Target:  5'- gUCCCCGCGAUUGGCGCGUCcUCccagauGGUCc -3'
miRNA:   3'- -GGGGGUGCUGGUCGUGUAGuAG------CCGG- -5'
2920 3' -57 NC_001493.1 + 85106 0.72 0.545101
Target:  5'- gCCCCuCGAUCAaCGCGUCAUCGcCCg -3'
miRNA:   3'- gGGGGuGCUGGUcGUGUAGUAGCcGG- -5'
2920 3' -57 NC_001493.1 + 87700 0.72 0.554002
Target:  5'- -gCCCGCGACCGGCACcaccgggGUCAggGGUUu -3'
miRNA:   3'- ggGGGUGCUGGUCGUG-------UAGUagCCGG- -5'
2920 3' -57 NC_001493.1 + 18247 0.72 0.563942
Target:  5'- aCCCCGgGGagaaaguCCAGCACGUCGcaCGGCUc -3'
miRNA:   3'- gGGGGUgCU-------GGUCGUGUAGUa-GCCGG- -5'
2920 3' -57 NC_001493.1 + 133801 0.72 0.563942
Target:  5'- aCCCCGgGGagaaaguCCAGCACGUCGcaCGGCUc -3'
miRNA:   3'- gGGGGUgCU-------GGUCGUGUAGUa-GCCGG- -5'
2920 3' -57 NC_001493.1 + 33325 0.72 0.564938
Target:  5'- aCCCUgAUGAUCGG---GUCGUCGGCCa -3'
miRNA:   3'- -GGGGgUGCUGGUCgugUAGUAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.