miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2920 3' -57 NC_001493.1 + 820 0.73 0.495656
Target:  5'- gCCCCCAaugucaaacUGACCGGCGCAcgucaugaagccaUCAUCaucGCCg -3'
miRNA:   3'- -GGGGGU---------GCUGGUCGUGU-------------AGUAGc--CGG- -5'
2920 3' -57 NC_001493.1 + 2161 0.67 0.826261
Target:  5'- -gUCCAUGGCCAGCcucACuagGUUGGCCa -3'
miRNA:   3'- ggGGGUGCUGGUCG---UGuagUAGCCGG- -5'
2920 3' -57 NC_001493.1 + 3095 0.76 0.341748
Target:  5'- aCCCCCGcCGACCuGGCugGUaa-CGGCCu -3'
miRNA:   3'- -GGGGGU-GCUGG-UCGugUAguaGCCGG- -5'
2920 3' -57 NC_001493.1 + 3625 0.68 0.782407
Target:  5'- gCCCCCGCGAauaCCGGUucGCA-CAggGGCg -3'
miRNA:   3'- -GGGGGUGCU---GGUCG--UGUaGUagCCGg -5'
2920 3' -57 NC_001493.1 + 4033 0.67 0.832079
Target:  5'- aCCCCGgacgGACCGGCucaugucccgaaauAUAUCAUCgauGGCCc -3'
miRNA:   3'- gGGGGUg---CUGGUCG--------------UGUAGUAG---CCGG- -5'
2920 3' -57 NC_001493.1 + 5067 0.68 0.773206
Target:  5'- gUCgCACGACCA-CACGUguaCAUCGGUCc -3'
miRNA:   3'- gGGgGUGCUGGUcGUGUA---GUAGCCGG- -5'
2920 3' -57 NC_001493.1 + 9130 0.7 0.675879
Target:  5'- aUCCCCGCGACC-GCGCuccCGgggauggCGGCg -3'
miRNA:   3'- -GGGGGUGCUGGuCGUGua-GUa------GCCGg -5'
2920 3' -57 NC_001493.1 + 9729 0.7 0.645599
Target:  5'- gUCCCguCGGCgAGCACcgCGUgguaGGCCg -3'
miRNA:   3'- -GGGGguGCUGgUCGUGuaGUAg---CCGG- -5'
2920 3' -57 NC_001493.1 + 10046 0.66 0.873846
Target:  5'- cCCCCUccugcugcugcggcuCGACCGGCucCAUCAauagGGCCu -3'
miRNA:   3'- -GGGGGu--------------GCUGGUCGu-GUAGUag--CCGG- -5'
2920 3' -57 NC_001493.1 + 11028 0.66 0.858288
Target:  5'- gCUUCACG-CCAGC-CGUCAUCccgagGGCUc -3'
miRNA:   3'- gGGGGUGCuGGUCGuGUAGUAG-----CCGG- -5'
2920 3' -57 NC_001493.1 + 12240 0.66 0.86581
Target:  5'- aUCCCCAUGAUgAGCG-AUCG-CGGgCg -3'
miRNA:   3'- -GGGGGUGCUGgUCGUgUAGUaGCCgG- -5'
2920 3' -57 NC_001493.1 + 13052 0.66 0.849782
Target:  5'- gUCCCCGgGGucaaCAGCugguggagcgaguGCGUC-UCGGCCa -3'
miRNA:   3'- -GGGGGUgCUg---GUCG-------------UGUAGuAGCCGG- -5'
2920 3' -57 NC_001493.1 + 13136 0.66 0.86581
Target:  5'- aCCCuguCCGCGACCgaaccgauGGCGaucUCGgcggCGGCCa -3'
miRNA:   3'- -GGG---GGUGCUGG--------UCGUgu-AGUa---GCCGG- -5'
2920 3' -57 NC_001493.1 + 13390 0.68 0.791475
Target:  5'- cCCCCCuugccccguguGCGGCC-GCGCGgUCGUgGgGCCc -3'
miRNA:   3'- -GGGGG-----------UGCUGGuCGUGU-AGUAgC-CGG- -5'
2920 3' -57 NC_001493.1 + 13560 0.68 0.753493
Target:  5'- gCCCCACGACCGcgcggccGCACA-CGg-GGCa -3'
miRNA:   3'- gGGGGUGCUGGU-------CGUGUaGUagCCGg -5'
2920 3' -57 NC_001493.1 + 14344 0.66 0.873126
Target:  5'- uCCCCCGCGA---GCuCGUUGagGGCCa -3'
miRNA:   3'- -GGGGGUGCUgguCGuGUAGUagCCGG- -5'
2920 3' -57 NC_001493.1 + 16468 0.71 0.625346
Target:  5'- aCCCCUACGGCUcccccaugggGGCACAcgucuaUUAUCcGCCa -3'
miRNA:   3'- -GGGGGUGCUGG----------UCGUGU------AGUAGcCGG- -5'
2920 3' -57 NC_001493.1 + 18247 0.72 0.563942
Target:  5'- aCCCCGgGGagaaaguCCAGCACGUCGcaCGGCUc -3'
miRNA:   3'- gGGGGUgCU-------GGUCGUGUAGUa-GCCGG- -5'
2920 3' -57 NC_001493.1 + 21151 0.68 0.791475
Target:  5'- gCCCCGCuaACCAGUucaggGCcUCGUCGGUg -3'
miRNA:   3'- gGGGGUGc-UGGUCG-----UGuAGUAGCCGg -5'
2920 3' -57 NC_001493.1 + 23219 0.71 0.625346
Target:  5'- aCUCCAUuucGCaCAGCGCAUCAUCccaccuGGCCg -3'
miRNA:   3'- gGGGGUGc--UG-GUCGUGUAGUAG------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.