Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2920 | 3' | -57 | NC_001493.1 | + | 110424 | 0.69 | 0.695904 |
Target: 5'- aCCCCC-CG-CCA-CACAUCG-CGGCg -3' miRNA: 3'- -GGGGGuGCuGGUcGUGUAGUaGCCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 30900 | 0.71 | 0.612189 |
Target: 5'- gCCCCCAUGccACCGGuCACggCGUggaccgucccggugCGGCCg -3' miRNA: 3'- -GGGGGUGC--UGGUC-GUGuaGUA--------------GCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 16468 | 0.71 | 0.625346 |
Target: 5'- aCCCCUACGGCUcccccaugggGGCACAcgucuaUUAUCcGCCa -3' miRNA: 3'- -GGGGGUGCUGG----------UCGUGU------AGUAGcCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 132022 | 0.71 | 0.625346 |
Target: 5'- aCCCCUACGGCUcccccaugggGGCACAcgucuaUUAUCcGCCa -3' miRNA: 3'- -GGGGGUGCUGG----------UCGUGU------AGUAGcCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 23219 | 0.71 | 0.625346 |
Target: 5'- aCUCCAUuucGCaCAGCGCAUCAUCccaccuGGCCg -3' miRNA: 3'- gGGGGUGc--UG-GUCGUGUAGUAG------CCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 31661 | 0.7 | 0.635474 |
Target: 5'- cCUCaCCGCGACCaccGGCACcUCAUCGuCCc -3' miRNA: 3'- -GGG-GGUGCUGG---UCGUGuAGUAGCcGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 9130 | 0.7 | 0.675879 |
Target: 5'- aUCCCCGCGACC-GCGCuccCGgggauggCGGCg -3' miRNA: 3'- -GGGGGUGCUGGuCGUGua-GUa------GCCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 124685 | 0.7 | 0.675879 |
Target: 5'- aUCCCCGCGACC-GCGCuccCGgggauggCGGCg -3' miRNA: 3'- -GGGGGUGCUGGuCGUGua-GUa------GCCGg -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 107435 | 0.69 | 0.695904 |
Target: 5'- cCCCCCGgGACCGGU--GUCAaCGccGCCa -3' miRNA: 3'- -GGGGGUgCUGGUCGugUAGUaGC--CGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 133801 | 0.72 | 0.563942 |
Target: 5'- aCCCCGgGGagaaaguCCAGCACGUCGcaCGGCUc -3' miRNA: 3'- gGGGGUgCU-------GGUCGUGUAGUa-GCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 18247 | 0.72 | 0.563942 |
Target: 5'- aCCCCGgGGagaaaguCCAGCACGUCGcaCGGCUc -3' miRNA: 3'- gGGGGUgCU-------GGUCGUGUAGUa-GCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 111562 | 0.72 | 0.51579 |
Target: 5'- gUCUCCGCGAgCAGCGCGUCAaaguccccgaCGGUCc -3' miRNA: 3'- -GGGGGUGCUgGUCGUGUAGUa---------GCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 28586 | 0.75 | 0.365026 |
Target: 5'- gCUCCAgCGGCCGuGCGCAUC-UCGGUCg -3' miRNA: 3'- gGGGGU-GCUGGU-CGUGUAGuAGCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 84423 | 0.75 | 0.389377 |
Target: 5'- uCCCCgACGACCAGUGgAUCGgugaGGCUc -3' miRNA: 3'- -GGGGgUGCUGGUCGUgUAGUag--CCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 102052 | 0.74 | 0.450153 |
Target: 5'- gUCCCCGCGAgC-GCGC-UCAUCaGCCa -3' miRNA: 3'- -GGGGGUGCUgGuCGUGuAGUAGcCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 94385 | 0.73 | 0.476818 |
Target: 5'- aCCUCCACGACCaauaacuGGguCGUCAUCGcggagaacaGCCg -3' miRNA: 3'- -GGGGGUGCUGG-------UCguGUAGUAGC---------CGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 108474 | 0.73 | 0.477752 |
Target: 5'- cUCCCCACcACCuuauguAGCACGaUGUCGGCCc -3' miRNA: 3'- -GGGGGUGcUGG------UCGUGUaGUAGCCGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 820 | 0.73 | 0.495656 |
Target: 5'- gCCCCCAaugucaaacUGACCGGCGCAcgucaugaagccaUCAUCaucGCCg -3' miRNA: 3'- -GGGGGU---------GCUGGUCGUGU-------------AGUAGc--CGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 116374 | 0.73 | 0.495656 |
Target: 5'- gCCCCCAaugucaaacUGACCGGCGCAcgucaugaagccaUCAUCaucGCCg -3' miRNA: 3'- -GGGGGU---------GCUGGUCGUGU-------------AGUAGc--CGG- -5' |
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2920 | 3' | -57 | NC_001493.1 | + | 61371 | 0.73 | 0.50616 |
Target: 5'- uCCCCCGCuuGGCCGGUGCGgcgaaggguagCGUCGGUUg -3' miRNA: 3'- -GGGGGUG--CUGGUCGUGUa----------GUAGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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