miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29216 5' -51.5 NC_006150.1 + 191453 0.66 0.99771
Target:  5'- gCGcAGAa-AAGUGGCAGGGCgagaACCAGGc -3'
miRNA:   3'- -GC-UCUccUUUACCGUUUCGg---UGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 121953 0.66 0.997591
Target:  5'- cCGAcGAGGAAuuacccggaccuggGUGGCGugauGCCGCCcuGa -3'
miRNA:   3'- -GCU-CUCCUU--------------UACCGUuu--CGGUGGucC- -5'
29216 5' -51.5 NC_006150.1 + 203179 0.66 0.997292
Target:  5'- -cGGAGGAGGUGGCGGcuGCUGCUg-- -3'
miRNA:   3'- gcUCUCCUUUACCGUUu-CGGUGGucc -5'
29216 5' -51.5 NC_006150.1 + 117339 0.66 0.997292
Target:  5'- uGGGAGGAGAggaGGCc--GUCGCCAa- -3'
miRNA:   3'- gCUCUCCUUUa--CCGuuuCGGUGGUcc -5'
29216 5' -51.5 NC_006150.1 + 101915 0.66 0.997292
Target:  5'- aGAGAGGGcugcGUGGCuu-GCUGCUGGa -3'
miRNA:   3'- gCUCUCCUu---UACCGuuuCGGUGGUCc -5'
29216 5' -51.5 NC_006150.1 + 220250 0.66 0.997247
Target:  5'- uGAGAGGAGGgagGGUuGGGCaugcauaCACgCGGGg -3'
miRNA:   3'- gCUCUCCUUUa--CCGuUUCG-------GUG-GUCC- -5'
29216 5' -51.5 NC_006150.1 + 20644 0.66 0.997201
Target:  5'- gGAGAcucaucgcgccaaGGAAAcauuguuUGGCAcAGGCCACCAu- -3'
miRNA:   3'- gCUCU-------------CCUUU-------ACCGU-UUCGGUGGUcc -5'
29216 5' -51.5 NC_006150.1 + 207756 0.66 0.996812
Target:  5'- ---uGGGAAaaGUGGCAAAuaccauccGCCaACCAGGu -3'
miRNA:   3'- gcucUCCUU--UACCGUUU--------CGG-UGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 167583 0.66 0.994934
Target:  5'- -uGGAGGGAAUGagccGCAGGGUCACUGcGGu -3'
miRNA:   3'- gcUCUCCUUUAC----CGUUUCGGUGGU-CC- -5'
29216 5' -51.5 NC_006150.1 + 176064 0.67 0.994139
Target:  5'- gGAGuGGGAGGUGGUAAa--CACCuGGg -3'
miRNA:   3'- gCUC-UCCUUUACCGUUucgGUGGuCC- -5'
29216 5' -51.5 NC_006150.1 + 138647 0.67 0.994139
Target:  5'- cCGGGAGGAucUGaaGGGGCCGCCu-- -3'
miRNA:   3'- -GCUCUCCUuuACcgUUUCGGUGGucc -5'
29216 5' -51.5 NC_006150.1 + 161243 0.67 0.993882
Target:  5'- gGGGcguGGGAAUgGGCAAugGGCCACCccauugacgucaauGGGa -3'
miRNA:   3'- gCUCu--CCUUUA-CCGUU--UCGGUGG--------------UCC- -5'
29216 5' -51.5 NC_006150.1 + 1477 0.67 0.993246
Target:  5'- gCGGGuAGGaAGAUGGUGcAGGCgCGCCAGcGg -3'
miRNA:   3'- -GCUC-UCC-UUUACCGU-UUCG-GUGGUC-C- -5'
29216 5' -51.5 NC_006150.1 + 88358 0.67 0.992247
Target:  5'- uCGAGGGGGAGggGGCGgcGCaugCAGGa -3'
miRNA:   3'- -GCUCUCCUUUa-CCGUuuCGgugGUCC- -5'
29216 5' -51.5 NC_006150.1 + 215775 0.67 0.989898
Target:  5'- --cGAGGu--UGGCGAGgacGCCACCGuGGa -3'
miRNA:   3'- gcuCUCCuuuACCGUUU---CGGUGGU-CC- -5'
29216 5' -51.5 NC_006150.1 + 182688 0.67 0.989898
Target:  5'- gGGGAGGAAAugugcUGGCGuucuGCCACUu-- -3'
miRNA:   3'- gCUCUCCUUU-----ACCGUuu--CGGUGGucc -5'
29216 5' -51.5 NC_006150.1 + 83971 0.68 0.985374
Target:  5'- -uAGAGGAAGUGGUggaaAAAGCC-CCGu- -3'
miRNA:   3'- gcUCUCCUUUACCG----UUUCGGuGGUcc -5'
29216 5' -51.5 NC_006150.1 + 189848 0.68 0.985374
Target:  5'- cCGAGuGcuaccGAUGGCu-GGCCACCAGa -3'
miRNA:   3'- -GCUCuCcu---UUACCGuuUCGGUGGUCc -5'
29216 5' -51.5 NC_006150.1 + 88140 0.68 0.983565
Target:  5'- gCGGGGGGGug-GGCGcagugugcAAGCCAcggcuaugcCCAGGu -3'
miRNA:   3'- -GCUCUCCUuuaCCGU--------UUCGGU---------GGUCC- -5'
29216 5' -51.5 NC_006150.1 + 104541 0.69 0.979222
Target:  5'- gGAGAGGGccGAUgcugagaGGCAAAGUCGgucagaagcaucCCAGGg -3'
miRNA:   3'- gCUCUCCU--UUA-------CCGUUUCGGU------------GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.