miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 5' -47 NC_006150.1 + 216304 0.66 0.999976
Target:  5'- aGGCgac--GAGCGCGAcacggcggcauuucgGAGUCGCCCg -3'
miRNA:   3'- cUCGaggauUUCGCGUU---------------UUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 215940 0.73 0.979552
Target:  5'- aGAGCggCCUGAAGCaGCA----UCGCCUg -3'
miRNA:   3'- -CUCGa-GGAUUUCG-CGUuuuuAGUGGG- -5'
29219 5' -47 NC_006150.1 + 207541 0.71 0.995316
Target:  5'- -uGCUCUUGcuGGGCGguaGAAGGUCAUCCa -3'
miRNA:   3'- cuCGAGGAU--UUCGCg--UUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 207428 0.67 0.999912
Target:  5'- aAGCagUCCaUGAcGCGCGAA-AUCAUCCa -3'
miRNA:   3'- cUCG--AGG-AUUuCGCGUUUuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 207047 0.72 0.988908
Target:  5'- cAGCUCgCcGAAcGCGUccauGAGAAUCACCCa -3'
miRNA:   3'- cUCGAG-GaUUU-CGCG----UUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 204979 0.66 0.999972
Target:  5'- uAGCUCCcuucGAGCGCGAAGagcgucGUCAgCg -3'
miRNA:   3'- cUCGAGGau--UUCGCGUUUU------UAGUgGg -5'
29219 5' -47 NC_006150.1 + 202846 0.67 0.999835
Target:  5'- aGGCgCUUGAAGCGCGGGAGcuggcagcgcgggCACCUg -3'
miRNA:   3'- cUCGaGGAUUUCGCGUUUUUa------------GUGGG- -5'
29219 5' -47 NC_006150.1 + 196869 0.68 0.999579
Target:  5'- -uGCUCUggggaaucuucacaUAAGGCGCAgccAAAAUCaugaGCCCa -3'
miRNA:   3'- cuCGAGG--------------AUUUCGCGU---UUUUAG----UGGG- -5'
29219 5' -47 NC_006150.1 + 187334 0.7 0.997985
Target:  5'- -uGUUUCUGGAGCGUAuuuGAGUCAUUCc -3'
miRNA:   3'- cuCGAGGAUUUCGCGUu--UUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 181652 0.72 0.987373
Target:  5'- -cGCUCgCUuucacccaGAAGCGCAugccAUCACCCu -3'
miRNA:   3'- cuCGAG-GA--------UUUCGCGUuuu-UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 181379 0.71 0.995316
Target:  5'- -cGcCUCCUAAGGCGUuauAAGGUCugCg -3'
miRNA:   3'- cuC-GAGGAUUUCGCGu--UUUUAGugGg -5'
29219 5' -47 NC_006150.1 + 175255 0.67 0.999912
Target:  5'- cGAGcCUCCUcAGAGCcGCcGAGGgcaACCCa -3'
miRNA:   3'- -CUC-GAGGA-UUUCG-CGuUUUUag-UGGG- -5'
29219 5' -47 NC_006150.1 + 168769 0.69 0.999224
Target:  5'- uGGgUCCUAcaacgacAAGCGCGAAAccAUCuguACCCa -3'
miRNA:   3'- cUCgAGGAU-------UUCGCGUUUU--UAG---UGGG- -5'
29219 5' -47 NC_006150.1 + 168715 0.66 0.999969
Target:  5'- uAGCUCCUcgauAGCGguGAAuagaugcaacacCACCCa -3'
miRNA:   3'- cUCGAGGAuu--UCGCguUUUua----------GUGGG- -5'
29219 5' -47 NC_006150.1 + 164883 0.66 0.999972
Target:  5'- cAGCUCagaaaUGAAGgGCAAuuguguguAUCACUCg -3'
miRNA:   3'- cUCGAGg----AUUUCgCGUUuu------UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 153924 0.67 0.99995
Target:  5'- cAGCUCCguguacuuGUGaau-GAUCACCCa -3'
miRNA:   3'- cUCGAGGauuu----CGCguuuUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 151361 0.66 0.999963
Target:  5'- gGAcUUCCUAAaucaacuagGGCGCu---AUCACCCu -3'
miRNA:   3'- -CUcGAGGAUU---------UCGCGuuuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 149247 0.66 0.999963
Target:  5'- cGGGCgugcgUCUGGAGggaGCAGGAGUaucaACCCg -3'
miRNA:   3'- -CUCGa----GGAUUUCg--CGUUUUUAg---UGGG- -5'
29219 5' -47 NC_006150.1 + 148943 0.73 0.983818
Target:  5'- aAGCUCCUcAGGGCGCuccucggcGUCGCCa -3'
miRNA:   3'- cUCGAGGA-UUUCGCGuuuu----UAGUGGg -5'
29219 5' -47 NC_006150.1 + 148722 0.67 0.99995
Target:  5'- uGGCUCC-AGGGCGCcu---UCuCCCg -3'
miRNA:   3'- cUCGAGGaUUUCGCGuuuuuAGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.