miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29219 5' -47 NC_006150.1 + 128816 1.13 0.016865
Target:  5'- aGAGCUCCUAAAGCGCAAAAAUCACCCc -3'
miRNA:   3'- -CUCGAGGAUUUCGCGUUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 103302 0.68 0.999755
Target:  5'- cGAGCucgUCCgcgGGAGgGCGuc-GUUACCCa -3'
miRNA:   3'- -CUCG---AGGa--UUUCgCGUuuuUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 175255 0.67 0.999912
Target:  5'- cGAGcCUCCUcAGAGCcGCcGAGGgcaACCCa -3'
miRNA:   3'- -CUC-GAGGA-UUUCG-CGuUUUUag-UGGG- -5'
29219 5' -47 NC_006150.1 + 4432 0.66 0.999985
Target:  5'- cGAuuUUCUGAGGCGCAGGGuccUCAUUCa -3'
miRNA:   3'- -CUcgAGGAUUUCGCGUUUUu--AGUGGG- -5'
29219 5' -47 NC_006150.1 + 181652 0.72 0.987373
Target:  5'- -cGCUCgCUuucacccaGAAGCGCAugccAUCACCCu -3'
miRNA:   3'- cuCGAG-GA--------UUUCGCGUuuu-UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 121582 0.71 0.99365
Target:  5'- cAGCUCCUGGAGC---AAGAUCGCUUc -3'
miRNA:   3'- cUCGAGGAUUUCGcguUUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 15255 0.71 0.996608
Target:  5'- uGGCUCCUGgaaGAGCGCuuAAAg-AUCCa -3'
miRNA:   3'- cUCGAGGAU---UUCGCGuuUUUagUGGG- -5'
29219 5' -47 NC_006150.1 + 75780 0.7 0.997134
Target:  5'- gGAGCagCU--GGCGCucAAGGUCACCUg -3'
miRNA:   3'- -CUCGagGAuuUCGCGu-UUUUAGUGGG- -5'
29219 5' -47 NC_006150.1 + 103261 0.69 0.998765
Target:  5'- cGAGCguaaacuugccggCCcGAGGCGCAAAGA-CGCUCu -3'
miRNA:   3'- -CUCGa------------GGaUUUCGCGUUUUUaGUGGG- -5'
29219 5' -47 NC_006150.1 + 131030 0.68 0.999607
Target:  5'- aGAGgUUaUGGAGCGCAAAGG-CGCUCg -3'
miRNA:   3'- -CUCgAGgAUUUCGCGUUUUUaGUGGG- -5'
29219 5' -47 NC_006150.1 + 45989 0.69 0.999241
Target:  5'- cGGC-CCaUAAGGCGUAucGAUCggGCCCa -3'
miRNA:   3'- cUCGaGG-AUUUCGCGUuuUUAG--UGGG- -5'
29219 5' -47 NC_006150.1 + 124385 0.7 0.998613
Target:  5'- uGGGCuUCCU--GGCGCAAAAcacCACCa -3'
miRNA:   3'- -CUCG-AGGAuuUCGCGUUUUua-GUGGg -5'
29219 5' -47 NC_006150.1 + 106643 0.74 0.965312
Target:  5'- -cGCUCCUGAauguagAGCGCAucgacgcuGUUGCCCa -3'
miRNA:   3'- cuCGAGGAUU------UCGCGUuuu-----UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 51535 0.69 0.999386
Target:  5'- cAGUUggCUGGAGCGCAAuuGUcCGCCCc -3'
miRNA:   3'- cUCGAg-GAUUUCGCGUUuuUA-GUGGG- -5'
29219 5' -47 NC_006150.1 + 215940 0.73 0.979552
Target:  5'- aGAGCggCCUGAAGCaGCA----UCGCCUg -3'
miRNA:   3'- -CUCGa-GGAUUUCG-CGUuuuuAGUGGG- -5'
29219 5' -47 NC_006150.1 + 8878 0.7 0.998323
Target:  5'- gGAGCUCCUcAAGGCGCGcAAcg-GCUCg -3'
miRNA:   3'- -CUCGAGGA-UUUCGCGUuUUuagUGGG- -5'
29219 5' -47 NC_006150.1 + 69534 0.68 0.999507
Target:  5'- cAGCUgCCUGGAGCuCGAGAAcugCGCCa -3'
miRNA:   3'- cUCGA-GGAUUUCGcGUUUUUa--GUGGg -5'
29219 5' -47 NC_006150.1 + 75503 0.67 0.999876
Target:  5'- cAGCUCUcauuGAGCGCGGccccaguuuggcucAuuauAUCACCCa -3'
miRNA:   3'- cUCGAGGau--UUCGCGUU--------------Uu---UAGUGGG- -5'
29219 5' -47 NC_006150.1 + 148943 0.73 0.983818
Target:  5'- aAGCUCCUcAGGGCGCuccucggcGUCGCCa -3'
miRNA:   3'- cUCGAGGA-UUUCGCGuuuu----UAGUGGg -5'
29219 5' -47 NC_006150.1 + 181379 0.71 0.995316
Target:  5'- -cGcCUCCUAAGGCGUuauAAGGUCugCg -3'
miRNA:   3'- cuC-GAGGAUUUCGCGu--UUUUAGugGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.