miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29231 3' -58.8 NC_006150.1 + 221095 0.69 0.705917
Target:  5'- aCCCUCGCCgcuacACCACAUGuCCAgCCUc- -3'
miRNA:   3'- -GGGGGUGG-----UGGUGUGCuGGUgGGAuu -5'
29231 3' -58.8 NC_006150.1 + 220813 0.74 0.440159
Target:  5'- -aCUC-CUACCACugGGCCGCCCUGc -3'
miRNA:   3'- ggGGGuGGUGGUGugCUGGUGGGAUu -5'
29231 3' -58.8 NC_006150.1 + 220028 0.66 0.868828
Target:  5'- gCCCgCCucggacguuCCACC-CGCGGCCACgCCa-- -3'
miRNA:   3'- -GGG-GGu--------GGUGGuGUGCUGGUG-GGauu -5'
29231 3' -58.8 NC_006150.1 + 216067 0.67 0.81463
Target:  5'- gUCCCCGCaCGCCACugugaGAUCACCg--- -3'
miRNA:   3'- -GGGGGUG-GUGGUGug---CUGGUGGgauu -5'
29231 3' -58.8 NC_006150.1 + 203280 0.77 0.307671
Target:  5'- gCCUCCACCACCACcuccgccGCcACCACCCUc- -3'
miRNA:   3'- -GGGGGUGGUGGUG-------UGcUGGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 198151 0.66 0.854235
Target:  5'- aCCUCCGCgGCC-CACcACCGUCCUAGg -3'
miRNA:   3'- -GGGGGUGgUGGuGUGcUGGUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 191740 0.71 0.625031
Target:  5'- gCCUCCACCcgcCCACGCGgacggcuuguuguuGCCugCCUGGu -3'
miRNA:   3'- -GGGGGUGGu--GGUGUGC--------------UGGugGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 183898 0.71 0.627973
Target:  5'- gCCUCCACCugCGC-CGGCCAaCUCUc- -3'
miRNA:   3'- -GGGGGUGGugGUGuGCUGGU-GGGAuu -5'
29231 3' -58.8 NC_006150.1 + 183833 0.7 0.641705
Target:  5'- gCCCCCGCCaguccccgcacugacACCACACGucaugcGCC-CCCUu- -3'
miRNA:   3'- -GGGGGUGG---------------UGGUGUGC------UGGuGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 183335 0.69 0.743761
Target:  5'- cCCCCCuCCACCGC-CucCUACCCa-- -3'
miRNA:   3'- -GGGGGuGGUGGUGuGcuGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 182624 0.66 0.875834
Target:  5'- cCCCCCACCccuucGCCuCGCugccACUACCCg-- -3'
miRNA:   3'- -GGGGGUGG-----UGGuGUGc---UGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 182571 0.67 0.822883
Target:  5'- uCUCCUACCAacCCuCACGGCCACUUg-- -3'
miRNA:   3'- -GGGGGUGGU--GGuGUGCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 182351 0.67 0.806224
Target:  5'- gCCCgGCCucccuCCuguGCGACCACCCg-- -3'
miRNA:   3'- gGGGgUGGu----GGug-UGCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 181872 0.67 0.846659
Target:  5'- gCUCCGCCAgCGCACucGCUACCUUGc -3'
miRNA:   3'- gGGGGUGGUgGUGUGc-UGGUGGGAUu -5'
29231 3' -58.8 NC_006150.1 + 180722 0.7 0.647587
Target:  5'- uCCUCCGCCACCGCGCcGCauuCCCc-- -3'
miRNA:   3'- -GGGGGUGGUGGUGUGcUGgu-GGGauu -5'
29231 3' -58.8 NC_006150.1 + 167923 0.68 0.780169
Target:  5'- gCCUCCugCGCCG-ACGACCAUggggCCUGc -3'
miRNA:   3'- -GGGGGugGUGGUgUGCUGGUG----GGAUu -5'
29231 3' -58.8 NC_006150.1 + 161681 0.68 0.801111
Target:  5'- aCCCCACC-CCAaacuuggcacggugcCAaguCGACCACCCc-- -3'
miRNA:   3'- gGGGGUGGuGGU---------------GU---GCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 161028 0.66 0.88264
Target:  5'- aCgCCUACCGCCcauuaacgucAUAgGACCGCCCc-- -3'
miRNA:   3'- -GgGGGUGGUGG----------UGUgCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 157725 0.74 0.457668
Target:  5'- gCUCCCACCACCACu--GCCAUCCa-- -3'
miRNA:   3'- -GGGGGUGGUGGUGugcUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 157469 0.7 0.667155
Target:  5'- aCCCUCACCuCC-CACGugCAUgCUAAa -3'
miRNA:   3'- -GGGGGUGGuGGuGUGCugGUGgGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.