miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29231 3' -58.8 NC_006150.1 + 147332 1.08 0.002951
Target:  5'- cCCCCCACCACCACACGACCACCCUAAg -3'
miRNA:   3'- -GGGGGUGGUGGUGUGCUGGUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 132801 0.69 0.743761
Target:  5'- cCUCUCGCUcuuGgCACugGGCCACCCUc- -3'
miRNA:   3'- -GGGGGUGG---UgGUGugCUGGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 92533 0.68 0.762177
Target:  5'- aCUCCCACCACCGCcaGCaucCCGCCUc-- -3'
miRNA:   3'- -GGGGGUGGUGGUG--UGcu-GGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 128678 0.65 0.887283
Target:  5'- cCCCCUGaugacguuuugcggUCGCUAuCGCGACUACCCUc- -3'
miRNA:   3'- -GGGGGU--------------GGUGGU-GUGCUGGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 150335 0.76 0.366399
Target:  5'- -aCCCGCCGCCcgaGCACGugCACCgCUGGa -3'
miRNA:   3'- ggGGGUGGUGG---UGUGCugGUGG-GAUU- -5'
29231 3' -58.8 NC_006150.1 + 137629 0.75 0.414627
Target:  5'- aCCUgACCACCAC-CGACCACCa--- -3'
miRNA:   3'- gGGGgUGGUGGUGuGCUGGUGGgauu -5'
29231 3' -58.8 NC_006150.1 + 157725 0.74 0.457668
Target:  5'- gCUCCCACCACCACu--GCCAUCCa-- -3'
miRNA:   3'- -GGGGGUGGUGGUGugcUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 92635 0.71 0.618167
Target:  5'- -aCUCGCCGCCgguGCGCGACuCGCCCg-- -3'
miRNA:   3'- ggGGGUGGUGG---UGUGCUG-GUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 157469 0.7 0.667155
Target:  5'- aCCCUCACCuCC-CACGugCAUgCUAAa -3'
miRNA:   3'- -GGGGGUGGuGGuGUGCugGUGgGAUU- -5'
29231 3' -58.8 NC_006150.1 + 247 0.69 0.715484
Target:  5'- aCCCCC-CCGCCACAaa--CACCCc-- -3'
miRNA:   3'- -GGGGGuGGUGGUGUgcugGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 93510 0.7 0.686619
Target:  5'- uCCUCCucuuuguCC-CCugACGACCACCCc-- -3'
miRNA:   3'- -GGGGGu------GGuGGugUGCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 180722 0.7 0.647587
Target:  5'- uCCUCCGCCACCGCGCcGCauuCCCc-- -3'
miRNA:   3'- -GGGGGUGGUGGUGUGcUGgu-GGGauu -5'
29231 3' -58.8 NC_006150.1 + 88493 0.8 0.194502
Target:  5'- cCCCCCGCCaggGCUGCGCGGCCGcuCCCUGGa -3'
miRNA:   3'- -GGGGGUGG---UGGUGUGCUGGU--GGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 142374 0.69 0.696292
Target:  5'- gUCCCCACCGCCcccgcuUACcGCUACCCg-- -3'
miRNA:   3'- -GGGGGUGGUGGu-----GUGcUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 152262 0.79 0.246019
Target:  5'- aCCCCCACCGCUucCACGAUCACCa--- -3'
miRNA:   3'- -GGGGGUGGUGGu-GUGCUGGUGGgauu -5'
29231 3' -58.8 NC_006150.1 + 191740 0.71 0.625031
Target:  5'- gCCUCCACCcgcCCACGCGgacggcuuguuguuGCCugCCUGGu -3'
miRNA:   3'- -GGGGGUGGu--GGUGUGC--------------UGGugGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 221095 0.69 0.705917
Target:  5'- aCCCUCGCCgcuacACCACAUGuCCAgCCUc- -3'
miRNA:   3'- -GGGGGUGG-----UGGUGUGCuGGUgGGAuu -5'
29231 3' -58.8 NC_006150.1 + 701 0.69 0.743761
Target:  5'- cCCCCCGCCGCgACccccgGGCCcCCCUc- -3'
miRNA:   3'- -GGGGGUGGUGgUGug---CUGGuGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 203280 0.77 0.307671
Target:  5'- gCCUCCACCACCACcuccgccGCcACCACCCUc- -3'
miRNA:   3'- -GGGGGUGGUGGUG-------UGcUGGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 220813 0.74 0.440159
Target:  5'- -aCUC-CUACCACugGGCCGCCCUGc -3'
miRNA:   3'- ggGGGuGGUGGUGugCUGGUGGGAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.