miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29245 5' -59 NC_006150.1 + 205023 0.66 0.860914
Target:  5'- gACGGCCUGUuacucccagGAGauaccaGGgAGUAGCCAGa -3'
miRNA:   3'- gUGUCGGGCA---------CUCg-----CUgUCGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 219726 0.66 0.860914
Target:  5'- uUugGGgCUGUGAGUGACAguuGCAGCagCAGc -3'
miRNA:   3'- -GugUCgGGCACUCGCUGU---CGUCG--GUC- -5'
29245 5' -59 NC_006150.1 + 219514 0.66 0.845781
Target:  5'- -gUAGCCCGc-AGUGAgAGCAGCUAa -3'
miRNA:   3'- guGUCGGGCacUCGCUgUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 113295 0.66 0.83794
Target:  5'- aACGGUCCGUaaaAGCGGCGGUAGaugCGGa -3'
miRNA:   3'- gUGUCGGGCAc--UCGCUGUCGUCg--GUC- -5'
29245 5' -59 NC_006150.1 + 206960 0.66 0.83794
Target:  5'- aAguGUCCG-GAGCGGCcgacGGUAGCUGGg -3'
miRNA:   3'- gUguCGGGCaCUCGCUG----UCGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 168695 0.66 0.83794
Target:  5'- aGCGGCCCagaUGAcCGACAGUAGCa-- -3'
miRNA:   3'- gUGUCGGGc--ACUcGCUGUCGUCGguc -5'
29245 5' -59 NC_006150.1 + 82926 0.66 0.83794
Target:  5'- uUACGGCCCcugcugucgGGGaGGCGGUAGCCAa -3'
miRNA:   3'- -GUGUCGGGca-------CUCgCUGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 118779 0.66 0.829924
Target:  5'- uCACGGCCUccGGGCaGCAGCuGCgAGg -3'
miRNA:   3'- -GUGUCGGGcaCUCGcUGUCGuCGgUC- -5'
29245 5' -59 NC_006150.1 + 91661 0.66 0.829924
Target:  5'- cCGCAGCCCG---GCuACGGUGGCCAu -3'
miRNA:   3'- -GUGUCGGGCacuCGcUGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 36200 0.66 0.821739
Target:  5'- aGCAGCUgCGUGugcAGCaGAguGUGGCCAGg -3'
miRNA:   3'- gUGUCGG-GCAC---UCG-CUguCGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 47672 0.66 0.821739
Target:  5'- --uGGCUCGUcaucaucaucGGCGACGGCGGCCGc -3'
miRNA:   3'- gugUCGGGCAc---------UCGCUGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 4375 0.67 0.813394
Target:  5'- gCACGGaCCGUaGGC-ACAcGCAGCCGGa -3'
miRNA:   3'- -GUGUCgGGCAcUCGcUGU-CGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 173261 0.67 0.79625
Target:  5'- gGCAGCUCGUGAGCagagcgauguuGGCAcGgAGCCu- -3'
miRNA:   3'- gUGUCGGGCACUCG-----------CUGU-CgUCGGuc -5'
29245 5' -59 NC_006150.1 + 127212 0.67 0.79625
Target:  5'- --uGGCUgGUGAGCaAUAGCAGCgGGu -3'
miRNA:   3'- gugUCGGgCACUCGcUGUCGUCGgUC- -5'
29245 5' -59 NC_006150.1 + 202623 0.67 0.769516
Target:  5'- aGCGGUCCGccUGAGCGGCuugucuuucAGCGuGCCAc -3'
miRNA:   3'- gUGUCGGGC--ACUCGCUG---------UCGU-CGGUc -5'
29245 5' -59 NC_006150.1 + 191292 0.68 0.760365
Target:  5'- gCGCAGCCCGaauAGCG-UGGCGGUCAa -3'
miRNA:   3'- -GUGUCGGGCac-UCGCuGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 52726 0.68 0.751108
Target:  5'- aGCAGCauugCUGUGAGUGAaGGguGCCAa -3'
miRNA:   3'- gUGUCG----GGCACUCGCUgUCguCGGUc -5'
29245 5' -59 NC_006150.1 + 152075 0.68 0.750177
Target:  5'- gGC-GCUCGUG-GCGACgaucaacAGCAGCCAc -3'
miRNA:   3'- gUGuCGGGCACuCGCUG-------UCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 131493 0.68 0.732309
Target:  5'- aACAGCCUGUG-GCuGuCAGCAGuCCGu -3'
miRNA:   3'- gUGUCGGGCACuCG-CuGUCGUC-GGUc -5'
29245 5' -59 NC_006150.1 + 132415 0.68 0.722784
Target:  5'- gGCGGCUCGgaccuaUGGGCuGGCGGUGGCCGa -3'
miRNA:   3'- gUGUCGGGC------ACUCG-CUGUCGUCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.