miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29259 5' -58.3 NC_006150.1 + 217627 0.66 0.912669
Target:  5'- -uGCGUacUCGGACUCAGGauCGGa--GGGa -3'
miRNA:   3'- agUGCG--AGUCUGAGUCC--GCCgugCCC- -5'
29259 5' -58.3 NC_006150.1 + 30801 0.66 0.906904
Target:  5'- cCGgGCUCcu-CUCAuuuGGCGGguCGGGa -3'
miRNA:   3'- aGUgCGAGucuGAGU---CCGCCguGCCC- -5'
29259 5' -58.3 NC_006150.1 + 130860 0.66 0.906904
Target:  5'- cUCugGaCgacGACUgAGGCGGCagcauagcaGCGGGg -3'
miRNA:   3'- -AGugC-GaguCUGAgUCCGCCG---------UGCCC- -5'
29259 5' -58.3 NC_006150.1 + 105357 0.66 0.906904
Target:  5'- uUCugGCUCAG-CU-GGGCGGCcuguuccucAUGGa -3'
miRNA:   3'- -AGugCGAGUCuGAgUCCGCCG---------UGCCc -5'
29259 5' -58.3 NC_006150.1 + 217999 0.66 0.888331
Target:  5'- gCGgGCUguGACUCAGGagacagcaaCGGC-CGGa -3'
miRNA:   3'- aGUgCGAguCUGAGUCC---------GCCGuGCCc -5'
29259 5' -58.3 NC_006150.1 + 148390 0.66 0.888331
Target:  5'- cCGCGUccgCGGAUggugCuGGCGGUGCGGa -3'
miRNA:   3'- aGUGCGa--GUCUGa---GuCCGCCGUGCCc -5'
29259 5' -58.3 NC_006150.1 + 110474 0.67 0.874915
Target:  5'- -gACGUUUAuGCUCcacaGCGGCAUGGGg -3'
miRNA:   3'- agUGCGAGUcUGAGuc--CGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 173052 0.67 0.845746
Target:  5'- uUCAC-CUCGGAUUCuGGUGGCGagugauCGGa -3'
miRNA:   3'- -AGUGcGAGUCUGAGuCCGCCGU------GCCc -5'
29259 5' -58.3 NC_006150.1 + 118943 0.67 0.845746
Target:  5'- cCGCGCUCAG-CUCgaagGGGaUGGUgAUGGGg -3'
miRNA:   3'- aGUGCGAGUCuGAG----UCC-GCCG-UGCCC- -5'
29259 5' -58.3 NC_006150.1 + 58827 0.67 0.837997
Target:  5'- -gGCGCcggCGGGCUCgAGGCGGUcauGCaGGa -3'
miRNA:   3'- agUGCGa--GUCUGAG-UCCGCCG---UGcCC- -5'
29259 5' -58.3 NC_006150.1 + 199339 0.68 0.830078
Target:  5'- cCACGCUCAuGAUgUAGGCGGUgACGa- -3'
miRNA:   3'- aGUGCGAGU-CUGaGUCCGCCG-UGCcc -5'
29259 5' -58.3 NC_006150.1 + 140378 0.68 0.821994
Target:  5'- ---aGCUCAGugUCuGGGCGGU--GGGa -3'
miRNA:   3'- agugCGAGUCugAG-UCCGCCGugCCC- -5'
29259 5' -58.3 NC_006150.1 + 96747 0.68 0.796827
Target:  5'- cCAUGCUgAGAUUCuGGaGGC-CGGGu -3'
miRNA:   3'- aGUGCGAgUCUGAGuCCgCCGuGCCC- -5'
29259 5' -58.3 NC_006150.1 + 180865 0.69 0.782892
Target:  5'- gCGuCGCUCGGACagggguucuuagcugUCaaucucugcAGGCGGCGCGGc -3'
miRNA:   3'- aGU-GCGAGUCUG---------------AG---------UCCGCCGUGCCc -5'
29259 5' -58.3 NC_006150.1 + 202892 0.69 0.779358
Target:  5'- -gGCGcCUCGGGCgguuGUGGCGCGGGc -3'
miRNA:   3'- agUGC-GAGUCUGagucCGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 219694 0.69 0.779358
Target:  5'- gCACGCucaUCAGACuuucguUCAGcGUGGCAUuuGGGg -3'
miRNA:   3'- aGUGCG---AGUCUG------AGUC-CGCCGUG--CCC- -5'
29259 5' -58.3 NC_006150.1 + 69608 0.69 0.779358
Target:  5'- cCACGgUUgcugcGGCUCAcGUGGCACGGGc -3'
miRNA:   3'- aGUGCgAGu----CUGAGUcCGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 65445 0.69 0.776695
Target:  5'- -gGCGCUCAGuucgggucgggcuaGCUCGGcggccGUGGCGCuGGGg -3'
miRNA:   3'- agUGCGAGUC--------------UGAGUC-----CGCCGUG-CCC- -5'
29259 5' -58.3 NC_006150.1 + 183523 0.69 0.77044
Target:  5'- uUUGCGCUgCGGAUUCugcguGGGCuccGGUGCGGGg -3'
miRNA:   3'- -AGUGCGA-GUCUGAG-----UCCG---CCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 1986 0.69 0.752273
Target:  5'- cCGCGgUCuGGGCUgAGGCGGUcuGCGGu -3'
miRNA:   3'- aGUGCgAG-UCUGAgUCCGCCG--UGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.