miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29266 3' -54.7 NC_006150.1 + 88247 0.65 0.979629
Target:  5'- aGCG-GCCGCGCagcccugGCGG-GggGCGgaGCGu -3'
miRNA:   3'- -CGCuCGGCGCG-------UGCCaCuuUGUg-UGU- -5'
29266 3' -54.7 NC_006150.1 + 169816 0.66 0.975193
Target:  5'- -aGAaCCGCGCGCGGauAGACAC-CAu -3'
miRNA:   3'- cgCUcGGCGCGUGCCacUUUGUGuGU- -5'
29266 3' -54.7 NC_006150.1 + 63691 0.66 0.975193
Target:  5'- --aAGCUGCGCGCcGUGuu-CGCGCAa -3'
miRNA:   3'- cgcUCGGCGCGUGcCACuuuGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 150229 0.66 0.972593
Target:  5'- gGCGAGuCUGCucguCAUGGUuAAGCAUACAa -3'
miRNA:   3'- -CGCUC-GGCGc---GUGCCAcUUUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 82242 0.66 0.969802
Target:  5'- aGCGaAGuCUGUGUACGGUucuGGCGCACc -3'
miRNA:   3'- -CGC-UC-GGCGCGUGCCAcu-UUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 218155 0.66 0.968631
Target:  5'- cGCGAGCCGCGCuagcgacaccacuUGGUGugugUACAg- -3'
miRNA:   3'- -CGCUCGGCGCGu------------GCCACuuu-GUGUgu -5'
29266 3' -54.7 NC_006150.1 + 88436 0.66 0.966814
Target:  5'- -aGGGCCGCcCAgaaGGgcgGggGCGCGCGg -3'
miRNA:   3'- cgCUCGGCGcGUg--CCa--CuuUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 141005 0.67 0.960223
Target:  5'- cCGAG-CGCGUGCGGuUGAGAauCGCGCu -3'
miRNA:   3'- cGCUCgGCGCGUGCC-ACUUU--GUGUGu -5'
29266 3' -54.7 NC_006150.1 + 116114 0.67 0.960223
Target:  5'- ---cGCUGCGCgaACGGuUGAGAUACGCc -3'
miRNA:   3'- cgcuCGGCGCG--UGCC-ACUUUGUGUGu -5'
29266 3' -54.7 NC_006150.1 + 133653 0.67 0.956611
Target:  5'- uGCGAGCCGCcCuCGGUuuc-CACGCGu -3'
miRNA:   3'- -CGCUCGGCGcGuGCCAcuuuGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 170519 0.67 0.956611
Target:  5'- --aGGCCGCGCucacauucgGCGGUG-AGCACGa- -3'
miRNA:   3'- cgcUCGGCGCG---------UGCCACuUUGUGUgu -5'
29266 3' -54.7 NC_006150.1 + 108973 0.67 0.956238
Target:  5'- uGCGAGCCgggugagagGCGC-CGGUuggcguaGuuGCACGCGu -3'
miRNA:   3'- -CGCUCGG---------CGCGuGCCA-------CuuUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 81993 0.67 0.954339
Target:  5'- uCGAGCCaGUGCgaugugaauauacaaACGGUGGAGCAggaucuCACGg -3'
miRNA:   3'- cGCUCGG-CGCG---------------UGCCACUUUGU------GUGU- -5'
29266 3' -54.7 NC_006150.1 + 4389 0.67 0.952781
Target:  5'- cUGAGUccaggCGCGCACGGaccGuAGGCACACGc -3'
miRNA:   3'- cGCUCG-----GCGCGUGCCa--C-UUUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 75260 0.67 0.94873
Target:  5'- -gGGGCCGCGCucaaugagagcuGCGGccgUGAcaccgcgauAGCACACGa -3'
miRNA:   3'- cgCUCGGCGCG------------UGCC---ACU---------UUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 83269 0.68 0.944015
Target:  5'- cGCGugacuguGGCCGCuaACGGUGcGAugACGCc -3'
miRNA:   3'- -CGC-------UCGGCGcgUGCCAC-UUugUGUGu -5'
29266 3' -54.7 NC_006150.1 + 115712 0.68 0.939953
Target:  5'- aGCGAGCCGCGguUGG----ACGCcCAa -3'
miRNA:   3'- -CGCUCGGCGCguGCCacuuUGUGuGU- -5'
29266 3' -54.7 NC_006150.1 + 171215 0.68 0.935223
Target:  5'- cGUGAGuCUGCGCG-GGUGucuGugGCGCGg -3'
miRNA:   3'- -CGCUC-GGCGCGUgCCACu--UugUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 118031 0.68 0.935223
Target:  5'- uCGAGcCCGCGguCGCGGuUGAgaaGAUACACGg -3'
miRNA:   3'- cGCUC-GGCGC--GUGCC-ACU---UUGUGUGU- -5'
29266 3' -54.7 NC_006150.1 + 125207 0.68 0.930263
Target:  5'- aGCGAGCCGCGU--GGcucaUGAGAUAC-CGa -3'
miRNA:   3'- -CGCUCGGCGCGugCC----ACUUUGUGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.