Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29303 | 3' | -53.4 | NC_006150.1 | + | 135663 | 0.66 | 0.991078 |
Target: 5'- cCGCGCGGCGAa-ACUGCAcUACuCCUg -3' miRNA: 3'- cGCGCGCUGCUaaUGGUGUaGUG-GGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 38160 | 0.66 | 0.991078 |
Target: 5'- cGCGCG-GACGGUc-CCGagagCGCCCUg -3' miRNA: 3'- -CGCGCgCUGCUAauGGUgua-GUGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 152472 | 0.66 | 0.991078 |
Target: 5'- cUGCGCGGCGGUgGCCGaaaagCAgCCa -3' miRNA: 3'- cGCGCGCUGCUAaUGGUgua--GUgGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 111892 | 0.66 | 0.989861 |
Target: 5'- -gGCGCGuuUGGUcgACCAgCAUCGCCUa -3' miRNA: 3'- cgCGCGCu-GCUAa-UGGU-GUAGUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 38219 | 0.66 | 0.988518 |
Target: 5'- aGCGUGUGACGAU--CCACAgg-UCCg -3' miRNA: 3'- -CGCGCGCUGCUAauGGUGUaguGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 220755 | 0.66 | 0.988089 |
Target: 5'- aUGCGCGACGuuggcGCCACuGaucuacggcaacuuUCACCCa -3' miRNA: 3'- cGCGCGCUGCuaa--UGGUG-U--------------AGUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 2421 | 0.66 | 0.987648 |
Target: 5'- aGCGacgGCGACGAcaacgaaaacaccgUACC-CAUCACaCCUg -3' miRNA: 3'- -CGCg--CGCUGCUa-------------AUGGuGUAGUG-GGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 150102 | 0.66 | 0.98704 |
Target: 5'- uCGgGCGGCGggUACaCAgUAUCGCUCUg -3' miRNA: 3'- cGCgCGCUGCuaAUG-GU-GUAGUGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 111752 | 0.66 | 0.98704 |
Target: 5'- cUGCGCGACGA---CCAUcUCAgCCg -3' miRNA: 3'- cGCGCGCUGCUaauGGUGuAGUgGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 150364 | 0.66 | 0.98704 |
Target: 5'- uGCGCGCGcucgucagaGCGAUacugugUACC-CGcCGCCCg -3' miRNA: 3'- -CGCGCGC---------UGCUA------AUGGuGUaGUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 101775 | 0.66 | 0.985421 |
Target: 5'- aUGCGUGACGugcUGCCGCAcggacUGCCCa -3' miRNA: 3'- cGCGCGCUGCua-AUGGUGUa----GUGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 125458 | 0.66 | 0.985421 |
Target: 5'- cUGCGCGACGccgGCCugAcggUCGCgCCg -3' miRNA: 3'- cGCGCGCUGCuaaUGGugU---AGUG-GGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 117286 | 0.66 | 0.985421 |
Target: 5'- cGCGgGUGACGA--GCCGCAggauaGCCa- -3' miRNA: 3'- -CGCgCGCUGCUaaUGGUGUag---UGGga -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 207020 | 0.67 | 0.983651 |
Target: 5'- -gGCGUGAcCGuuuUUGCCGCcUCaACCCUg -3' miRNA: 3'- cgCGCGCU-GCu--AAUGGUGuAG-UGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 20879 | 0.67 | 0.981724 |
Target: 5'- -gGCGCGAUGAgucuCCAaGUCGCCa- -3' miRNA: 3'- cgCGCGCUGCUaau-GGUgUAGUGGga -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 59290 | 0.67 | 0.981724 |
Target: 5'- -aGCGCGGCGAUUcagcACC-CGUC-UCCa -3' miRNA: 3'- cgCGCGCUGCUAA----UGGuGUAGuGGGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 206617 | 0.67 | 0.979631 |
Target: 5'- aGCGCGCGcACag--GCCGCAucucuuucaUCACCUUc -3' miRNA: 3'- -CGCGCGC-UGcuaaUGGUGU---------AGUGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 122919 | 0.67 | 0.979631 |
Target: 5'- aGCGgugauugcccUGCGACGcuAUUACCGgCAUCACgCCg -3' miRNA: 3'- -CGC----------GCGCUGC--UAAUGGU-GUAGUG-GGa -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 66072 | 0.67 | 0.979631 |
Target: 5'- cGCGCGCGuuaGGUUGgUGCAgcgcUCGCUCUg -3' miRNA: 3'- -CGCGCGCug-CUAAUgGUGU----AGUGGGA- -5' |
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29303 | 3' | -53.4 | NC_006150.1 | + | 86184 | 0.67 | 0.977364 |
Target: 5'- gGCGCGCcgcccccuucGACGGUUauucgACCGCuuuUCgACCCa -3' miRNA: 3'- -CGCGCG----------CUGCUAA-----UGGUGu--AG-UGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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