Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29319 | 5' | -51.2 | NC_006150.1 | + | 182861 | 0.77 | 0.706069 |
Target: 5'- -gGCGAAGgggguGGGGGGUGUUUUGgGCg -3' miRNA: 3'- ggUGCUUCau---UCCUCCGCGAAACgCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 51880 | 0.66 | 0.997703 |
Target: 5'- cCCGCaGAcGGUAucgccggucugguccGGGAGGCauuUUUUGCGCu -3' miRNA: 3'- -GGUG-CU-UCAU---------------UCCUCCGc--GAAACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 70091 | 0.66 | 0.998259 |
Target: 5'- gCACGGAcUGGcGGuGGCGC--UGCGUg -3' miRNA: 3'- gGUGCUUcAUU-CCuCCGCGaaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 35450 | 0.66 | 0.998546 |
Target: 5'- aCACGAGGU----GGGCGg-UUGUGCa -3' miRNA: 3'- gGUGCUUCAuuccUCCGCgaAACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 47957 | 0.73 | 0.880178 |
Target: 5'- gCCGCGAGGUgugagccgguccucGAGGAGGaCGCg--GcCGCc -3' miRNA: 3'- -GGUGCUUCA--------------UUCCUCC-GCGaaaC-GCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 1865 | 0.73 | 0.8959 |
Target: 5'- gUCugGggGUGGGGGGuuGCGUggaggUGUGCg -3' miRNA: 3'- -GGugCuuCAUUCCUC--CGCGaa---ACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 88375 | 0.7 | 0.96437 |
Target: 5'- gCgGCGggGUGGGGuugucgagggggaGGGgGCg--GCGCa -3' miRNA: 3'- -GgUGCuuCAUUCC-------------UCCgCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 71045 | 0.69 | 0.975969 |
Target: 5'- gCCGCGuaucAGUGcggcgcaAGGGGuGCGCUcgcugGCGCa -3' miRNA: 3'- -GGUGCu---UCAU-------UCCUC-CGCGAaa---CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 88141 | 0.69 | 0.982842 |
Target: 5'- -gGCGggG--GGGuGGGCGCagUGUGCa -3' miRNA: 3'- ggUGCuuCauUCC-UCCGCGaaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 85057 | 0.66 | 0.997543 |
Target: 5'- gUACGGuuGUGaAGGAcGaGCGCUaUGCGCc -3' miRNA: 3'- gGUGCUu-CAU-UCCU-C-CGCGAaACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 206901 | 0.67 | 0.995894 |
Target: 5'- gCCAcCGAGGU--GGAGGCcGCUcacaacuuuugGCGCc -3' miRNA: 3'- -GGU-GCUUCAuuCCUCCG-CGAaa---------CGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 57736 | 0.69 | 0.978605 |
Target: 5'- uCCGCGAA--AAGGAGGUucaucgGCccauagUGCGCa -3' miRNA: 3'- -GGUGCUUcaUUCCUCCG------CGaa----ACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 81857 | 0.74 | 0.844472 |
Target: 5'- uCCAgGAGGcgGAGGAGGCGCUgaGgGa -3' miRNA: 3'- -GGUgCUUCa-UUCCUCCGCGAaaCgCg -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 63848 | 0.67 | 0.996018 |
Target: 5'- aCAUGuccAGUAAguGGAGGuCGUUUUGCaGCc -3' miRNA: 3'- gGUGCu--UCAUU--CCUCC-GCGAAACG-CG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 94845 | 0.74 | 0.852451 |
Target: 5'- aCCGCGAAGUGGuGGcuuacgacgaGGGCGC---GCGCg -3' miRNA: 3'- -GGUGCUUCAUU-CC----------UCCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 1432 | 0.69 | 0.976218 |
Target: 5'- -aGCGAgaaaGGcGAGGAGGUGUug-GCGCa -3' miRNA: 3'- ggUGCU----UCaUUCCUCCGCGaaaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 202208 | 0.66 | 0.996595 |
Target: 5'- aCugGGAaUAuuGGGGGUGCagUUGCGUg -3' miRNA: 3'- gGugCUUcAUu-CCUCCGCGa-AACGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 1252 | 0.66 | 0.997854 |
Target: 5'- -gAUGggGUgGAGGAGGUGCgcugagacggGCGa -3' miRNA: 3'- ggUGCuuCA-UUCCUCCGCGaaa-------CGCg -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 1673 | 0.74 | 0.860229 |
Target: 5'- -uGCGGAGUAGgagcGGAGGUGUUUgGCGUa -3' miRNA: 3'- ggUGCUUCAUU----CCUCCGCGAAaCGCG- -5' |
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29319 | 5' | -51.2 | NC_006150.1 | + | 86427 | 0.73 | 0.8959 |
Target: 5'- aCCGuCGAAG-GGGGcGGCGCgccagGCGCa -3' miRNA: 3'- -GGU-GCUUCaUUCCuCCGCGaaa--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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