miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29320 3' -55.9 NC_006150.1 + 221137 0.71 0.773627
Target:  5'- gGGGCGuGCGGgagACGUACGGCaGGCa- -3'
miRNA:   3'- gUCUGUuCGCUa--UGCGUGCCG-CCGcc -5'
29320 3' -55.9 NC_006150.1 + 219729 0.69 0.871609
Target:  5'- gGGGCuguGAGUGAcaguUGCaGCagcaGCGGCGGCGGc -3'
miRNA:   3'- gUCUG---UUCGCU----AUG-CG----UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 216307 0.71 0.764508
Target:  5'- -cGACGAGC---GCGaCACGGCGGCa- -3'
miRNA:   3'- guCUGUUCGcuaUGC-GUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 214828 0.69 0.864408
Target:  5'- aUAGGCAAGCGuagcgacgACGaugAUGGUGGUGGu -3'
miRNA:   3'- -GUCUGUUCGCua------UGCg--UGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 206550 0.67 0.926906
Target:  5'- aCAGACAguaguAGCGAggagggaggggACGaagAUGGCGGCGa -3'
miRNA:   3'- -GUCUGU-----UCGCUa----------UGCg--UGCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 193875 0.71 0.791503
Target:  5'- cUAGACGAGCGAUcauCGCuuagcUGGCuGCGGc -3'
miRNA:   3'- -GUCUGUUCGCUAu--GCGu----GCCGcCGCC- -5'
29320 3' -55.9 NC_006150.1 + 191650 0.66 0.957534
Target:  5'- aCAGcaGCGGGCcAUACGCugaGGCGGUaGGu -3'
miRNA:   3'- -GUC--UGUUCGcUAUGCGug-CCGCCG-CC- -5'
29320 3' -55.9 NC_006150.1 + 188388 0.66 0.964348
Target:  5'- aAGGCAGGUGAaaagaaGCGCucgaGGCaGGUGGu -3'
miRNA:   3'- gUCUGUUCGCUa-----UGCGug--CCG-CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 182255 0.66 0.967451
Target:  5'- aAGACAAccGCGugacacgGCGaC-CGGCGGCGa -3'
miRNA:   3'- gUCUGUU--CGCua-----UGC-GuGCCGCCGCc -5'
29320 3' -55.9 NC_006150.1 + 181624 0.67 0.945727
Target:  5'- -cGGCAagguAGCGGUGCGC-UGGCGGa-- -3'
miRNA:   3'- guCUGU----UCGCUAUGCGuGCCGCCgcc -5'
29320 3' -55.9 NC_006150.1 + 181285 0.76 0.484158
Target:  5'- gGGAgAGGCGGcUGCcCugGGCGGCGGc -3'
miRNA:   3'- gUCUgUUCGCU-AUGcGugCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 181153 0.69 0.864408
Target:  5'- gAGGCGAGCGG---GCAgGGCGG-GGa -3'
miRNA:   3'- gUCUGUUCGCUaugCGUgCCGCCgCC- -5'
29320 3' -55.9 NC_006150.1 + 180473 0.73 0.658753
Target:  5'- --cGCGGGgGaAUGCgGCGCGGUGGCGGa -3'
miRNA:   3'- gucUGUUCgC-UAUG-CGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 170812 0.69 0.857011
Target:  5'- -uGGCGAGUaAUACuGCACGGggucaGGCGGg -3'
miRNA:   3'- guCUGUUCGcUAUG-CGUGCCg----CCGCC- -5'
29320 3' -55.9 NC_006150.1 + 154576 0.72 0.727011
Target:  5'- ----uGAGCGAUGaGCACGGCGGCc- -3'
miRNA:   3'- gucugUUCGCUAUgCGUGCCGCCGcc -5'
29320 3' -55.9 NC_006150.1 + 152491 0.68 0.910442
Target:  5'- -uGAUuaaugcGGCGAcGCucuGCGCGGCGGUGGc -3'
miRNA:   3'- guCUGu-----UCGCUaUG---CGUGCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 150066 0.73 0.652817
Target:  5'- uCAGGCGcacacaaguaacuccAGCGGUgcACGUGCucgGGCGGCGGg -3'
miRNA:   3'- -GUCUGU---------------UCGCUA--UGCGUG---CCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 147868 0.67 0.926906
Target:  5'- -cGGCAAGCaguuAUACGCGCGuaGGCa- -3'
miRNA:   3'- guCUGUUCGc---UAUGCGUGCcgCCGcc -5'
29320 3' -55.9 NC_006150.1 + 142124 0.66 0.964348
Target:  5'- -cGGguAGCGGUAaGCgGgGGCGGUGGg -3'
miRNA:   3'- guCUguUCGCUAUgCG-UgCCGCCGCC- -5'
29320 3' -55.9 NC_006150.1 + 137818 0.71 0.755279
Target:  5'- aGGGCGcugAGUGGagagGCGCGgcaGGCGGCGGa -3'
miRNA:   3'- gUCUGU---UCGCUa---UGCGUg--CCGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.