miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29351 5' -46.7 NC_006150.1 + 137963 0.66 0.999993
Target:  5'- -gAGuuGAGCACC----UCGAuuaGAGCCa -3'
miRNA:   3'- caUCggCUUGUGGucaaAGUU---UUCGG- -5'
29351 5' -46.7 NC_006150.1 + 76786 0.66 0.999993
Target:  5'- gGUAGCUGuGCACC-GUUagCAGGGGUUg -3'
miRNA:   3'- -CAUCGGCuUGUGGuCAAa-GUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 124944 0.66 0.999993
Target:  5'- cUGGCUGAGgugUAUCGGUaucUCAuGAGCCa -3'
miRNA:   3'- cAUCGGCUU---GUGGUCAa--AGUuUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 122346 0.66 0.999993
Target:  5'- uGUGGCCaGGA-ACCAGcgUUCGAuGGUCg -3'
miRNA:   3'- -CAUCGG-CUUgUGGUCa-AAGUUuUCGG- -5'
29351 5' -46.7 NC_006150.1 + 40301 0.66 0.999991
Target:  5'- aUAGCC--GCACCAc--UCGAAGGUCg -3'
miRNA:   3'- cAUCGGcuUGUGGUcaaAGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 132737 0.66 0.999991
Target:  5'- --uGUCGGcCACCaAGUUUUAcGAGGCCu -3'
miRNA:   3'- cauCGGCUuGUGG-UCAAAGU-UUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 211232 0.66 0.999991
Target:  5'- --cGCCaGA--GCCAGUgguuugUUAGAGGCCa -3'
miRNA:   3'- cauCGG-CUugUGGUCAa-----AGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 145264 0.66 0.999991
Target:  5'- --cGgUGAGCGCCGGUUcgcgaUCGAGgagucuGGCCg -3'
miRNA:   3'- cauCgGCUUGUGGUCAA-----AGUUU------UCGG- -5'
29351 5' -46.7 NC_006150.1 + 120509 0.66 0.999991
Target:  5'- aUGGCUGAggugGCACaCAGUcugcUCGGGcAGCCg -3'
miRNA:   3'- cAUCGGCU----UGUG-GUCAa---AGUUU-UCGG- -5'
29351 5' -46.7 NC_006150.1 + 58360 0.66 0.999989
Target:  5'- aUGGCCGGcauguguuGCACCAGggaagacgaugCAucuGGCCu -3'
miRNA:   3'- cAUCGGCU--------UGUGGUCaaa--------GUuu-UCGG- -5'
29351 5' -46.7 NC_006150.1 + 160193 0.66 0.999987
Target:  5'- uGUAGCuUGGGcCACCAGg--UAGAGGCa -3'
miRNA:   3'- -CAUCG-GCUU-GUGGUCaaaGUUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 131805 0.66 0.999987
Target:  5'- --cGCCGAGCcguACCGGUUUCuuGAaacaCCa -3'
miRNA:   3'- cauCGGCUUG---UGGUCAAAGuuUUc---GG- -5'
29351 5' -46.7 NC_006150.1 + 164832 0.67 0.999976
Target:  5'- aGUAGCCc-ACAUUGGcaaUCGAAGGCCu -3'
miRNA:   3'- -CAUCGGcuUGUGGUCaa-AGUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 140663 0.67 0.999976
Target:  5'- -cGGCCGGugccggcaagACGuCCAGUaUUCAGGugcuGGCCg -3'
miRNA:   3'- caUCGGCU----------UGU-GGUCA-AAGUUU----UCGG- -5'
29351 5' -46.7 NC_006150.1 + 215395 0.67 0.999976
Target:  5'- ---aCCGAACAUCAGa---AAAAGCCc -3'
miRNA:   3'- caucGGCUUGUGGUCaaagUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 79841 0.67 0.999967
Target:  5'- aUGGCCGAAUAUCAcGUUUguAAA-CCa -3'
miRNA:   3'- cAUCGGCUUGUGGU-CAAAguUUUcGG- -5'
29351 5' -46.7 NC_006150.1 + 109124 0.67 0.999965
Target:  5'- -cGGCCGAGgaaacaGCCAGaaucggccgcCGAGAGCCa -3'
miRNA:   3'- caUCGGCUUg-----UGGUCaaa-------GUUUUCGG- -5'
29351 5' -46.7 NC_006150.1 + 29501 0.67 0.999955
Target:  5'- --uGCCGAACGCCAauaaugaAGAAGCa -3'
miRNA:   3'- cauCGGCUUGUGGUcaaag--UUUUCGg -5'
29351 5' -46.7 NC_006150.1 + 172655 0.67 0.999941
Target:  5'- -gGGCUGGAUGCCAGagggcCAGGuGCCa -3'
miRNA:   3'- caUCGGCUUGUGGUCaaa--GUUUuCGG- -5'
29351 5' -46.7 NC_006150.1 + 118441 0.67 0.999928
Target:  5'- cGUGGCCGGggcagagACGCCuuGUuuacugauguugcuuUUCAGGAGCg -3'
miRNA:   3'- -CAUCGGCU-------UGUGGu-CA---------------AAGUUUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.