Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29356 | 5' | -48.7 | NC_006150.1 | + | 60727 | 0.66 | 0.999891 |
Target: 5'- aGGCAGCGAGauGugGUUCgaaauUCGACAa -3' miRNA: 3'- gCUGUCGCUUguUugCGAG-----AGUUGUc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 217608 | 0.66 | 0.999891 |
Target: 5'- gCGcCAGCGcagGGCGGuGCGCUCUUGGCGa -3' miRNA: 3'- -GCuGUCGC---UUGUU-UGCGAGAGUUGUc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 125214 | 0.66 | 0.999891 |
Target: 5'- uCGGCauAGCGAGCc-GCGUggCUCAugAGa -3' miRNA: 3'- -GCUG--UCGCUUGuuUGCGa-GAGUugUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 40165 | 0.66 | 0.999859 |
Target: 5'- uGACAGCGuACGAGCcguaccucaucGCUCUgaccgaucaguaCAACGGc -3' miRNA: 3'- gCUGUCGCuUGUUUG-----------CGAGA------------GUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 118983 | 0.66 | 0.999859 |
Target: 5'- aGACgcuGGUGGAgAAcgccACGCUCugUCGACAGg -3' miRNA: 3'- gCUG---UCGCUUgUU----UGCGAG--AGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 71066 | 0.66 | 0.999859 |
Target: 5'- uGGCAGCGGGCAAGaggaggagcCGCguaUCAguGCGGc -3' miRNA: 3'- gCUGUCGCUUGUUU---------GCGag-AGU--UGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 88263 | 0.66 | 0.999819 |
Target: 5'- uGGCGGgGGGCgGAGCGUgcgCUCGGCuGg -3' miRNA: 3'- gCUGUCgCUUG-UUUGCGa--GAGUUGuC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 148023 | 0.66 | 0.999819 |
Target: 5'- aGGCAcCGGACGAGCGUggcacUCUCAAaAGa -3' miRNA: 3'- gCUGUcGCUUGUUUGCG-----AGAGUUgUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 2907 | 0.66 | 0.999819 |
Target: 5'- uGACGGCGGGCAGAUGCg---AGgAGg -3' miRNA: 3'- gCUGUCGCUUGUUUGCGagagUUgUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 91817 | 0.66 | 0.999769 |
Target: 5'- aGACGGCGuAGCAggGACGCgggCAAcCAGu -3' miRNA: 3'- gCUGUCGC-UUGU--UUGCGagaGUU-GUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 114014 | 0.66 | 0.999708 |
Target: 5'- gCGACGGCGcauAGCAAGCcuuGCUCUU--CGGg -3' miRNA: 3'- -GCUGUCGC---UUGUUUG---CGAGAGuuGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 35466 | 0.66 | 0.999708 |
Target: 5'- -uGCAGaUGGACAcucauaaacgcGGCGCagUCUCAACAGa -3' miRNA: 3'- gcUGUC-GCUUGU-----------UUGCG--AGAGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 114832 | 0.67 | 0.999632 |
Target: 5'- -cACGGCGAGCGGG-GCUggCAGCAGc -3' miRNA: 3'- gcUGUCGCUUGUUUgCGAgaGUUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 81949 | 0.67 | 0.999632 |
Target: 5'- gGAguuGCGAGCAGAccuccagccCGCUCUCcgggGACAGg -3' miRNA: 3'- gCUgu-CGCUUGUUU---------GCGAGAG----UUGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 106060 | 0.67 | 0.999541 |
Target: 5'- gCGGCAGCGGGCc-GCGUgaCUCGcGCAGc -3' miRNA: 3'- -GCUGUCGCUUGuuUGCGa-GAGU-UGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 182614 | 0.67 | 0.99943 |
Target: 5'- uGACAGCGAGCGcAGCGggUggUCGcACAGg -3' miRNA: 3'- gCUGUCGCUUGU-UUGCgaG--AGU-UGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 13614 | 0.67 | 0.99943 |
Target: 5'- aCGAC--UGAAUuaacuACGCUCUCAACAa -3' miRNA: 3'- -GCUGucGCUUGuu---UGCGAGAGUUGUc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 11504 | 0.67 | 0.99943 |
Target: 5'- uGAuCAGaaGAgAAACGCUCUCGccACAGg -3' miRNA: 3'- gCU-GUCgcUUgUUUGCGAGAGU--UGUC- -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 50506 | 0.67 | 0.99943 |
Target: 5'- uGGCGGUGAAUAAACuGagaCUCAACAu -3' miRNA: 3'- gCUGUCGCUUGUUUG-Cga-GAGUUGUc -5' |
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29356 | 5' | -48.7 | NC_006150.1 | + | 72942 | 0.67 | 0.999297 |
Target: 5'- uCGAUAGCGuAGCGGACGCUgaUGAucCAGa -3' miRNA: 3'- -GCUGUCGC-UUGUUUGCGAgaGUU--GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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