Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 5' | -61.1 | NC_006151.1 | + | 78745 | 0.68 | 0.523371 |
Target: 5'- gGCCCACgUccGCCGUCUG-CGccgagGCGGCg -3' miRNA: 3'- -CGGGUGgA--CGGCGGACuGCa----CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 61445 | 0.68 | 0.523371 |
Target: 5'- cGCCCGCCcgcguccGCCGCC--AUGUGCGGg- -3' miRNA: 3'- -CGGGUGGa------CGGCGGacUGCACGUCga -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 117637 | 0.68 | 0.531084 |
Target: 5'- uGCCCACgUGCaCGCCgcgcugcuccggGGCGUccaggcaccGCGGCg -3' miRNA: 3'- -CGGGUGgACG-GCGGa-----------CUGCA---------CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 104418 | 0.68 | 0.542728 |
Target: 5'- gGCCCGCgCcGCCGCCggcauggGGCGcuuCAGCUa -3' miRNA: 3'- -CGGGUG-GaCGGCGGa------CUGCac-GUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 65767 | 0.68 | 0.542728 |
Target: 5'- cGUCC-CCgucGCCGCC-GGCG-GCGGCg -3' miRNA: 3'- -CGGGuGGa--CGGCGGaCUGCaCGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 107057 | 0.68 | 0.542728 |
Target: 5'- aGCCgGCCUGCCucguGCUggugGACucGCAGCUg -3' miRNA: 3'- -CGGgUGGACGG----CGGa---CUGcaCGUCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 5626 | 0.68 | 0.546629 |
Target: 5'- gGCgCCGCC-GCCGCCgGGCGccgagaccggcccgGCGGCg -3' miRNA: 3'- -CG-GGUGGaCGGCGGaCUGCa-------------CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 82343 | 0.68 | 0.552496 |
Target: 5'- gGCCaCACC-GCCGCC-GugGUGUAcguGCg -3' miRNA: 3'- -CGG-GUGGaCGGCGGaCugCACGU---CGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 61239 | 0.68 | 0.552496 |
Target: 5'- aGCCCAUCggagcGCgCGCCacgagGACGcgGCGGCa -3' miRNA: 3'- -CGGGUGGa----CG-GCGGa----CUGCa-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 97717 | 0.68 | 0.552496 |
Target: 5'- gGCCCAggaGCCcCCcgagGACGUGCAGCg -3' miRNA: 3'- -CGGGUggaCGGcGGa---CUGCACGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 36717 | 0.67 | 0.560348 |
Target: 5'- aGCCCGCC-GCCGCgaGGCGgcucgauccucgGCcGCUu -3' miRNA: 3'- -CGGGUGGaCGGCGgaCUGCa-----------CGuCGA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 139672 | 0.67 | 0.562316 |
Target: 5'- cGCCCGacaggcCCUGCgGCagcGGCGgcgGCAGCa -3' miRNA: 3'- -CGGGU------GGACGgCGga-CUGCa--CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 132425 | 0.67 | 0.562316 |
Target: 5'- uGCCCucgUCgcgGCgCGCCUGcGCGUGCAGgUa -3' miRNA: 3'- -CGGGu--GGa--CG-GCGGAC-UGCACGUCgA- -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 49594 | 0.67 | 0.562316 |
Target: 5'- cGCCCcggccagcGCgCUGCCGguCCUGGCgGUGCuGCg -3' miRNA: 3'- -CGGG--------UG-GACGGC--GGACUG-CACGuCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 107702 | 0.67 | 0.570205 |
Target: 5'- aGCCCGCCgccggcaccaagGCCGCCgcGGCccccaaGCAGCa -3' miRNA: 3'- -CGGGUGGa-----------CGGCGGa-CUGca----CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 66760 | 0.67 | 0.572182 |
Target: 5'- cGCgaCGCCgcgacgGCCGCCcucggGACGgcgGCGGCg -3' miRNA: 3'- -CGg-GUGGa-----CGGCGGa----CUGCa--CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 103892 | 0.67 | 0.572182 |
Target: 5'- cGCgCCACCUGgCGCUggaggUGGCGcgcGCGGCc -3' miRNA: 3'- -CG-GGUGGACgGCGG-----ACUGCa--CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 9037 | 0.67 | 0.572182 |
Target: 5'- cGCCCGCCggGgCGCCccGCGUGCuccgggGGCg -3' miRNA: 3'- -CGGGUGGa-CgGCGGacUGCACG------UCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 57870 | 0.67 | 0.572182 |
Target: 5'- cGCgCGCCccGCCGgCaGACGUcGCAGCg -3' miRNA: 3'- -CGgGUGGa-CGGCgGaCUGCA-CGUCGa -5' |
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29367 | 5' | -61.1 | NC_006151.1 | + | 92045 | 0.67 | 0.572182 |
Target: 5'- cGCCCgcuGCCUGCugCGCCUGcuGCGcaUGCuGCa -3' miRNA: 3'- -CGGG---UGGACG--GCGGAC--UGC--ACGuCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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