miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 104526 0.66 0.516405
Target:  5'- cCGCCgCGGCuuccccgaguacgAGGCCgaGCuggccgcccugGGCGcGCGGCg -3'
miRNA:   3'- -GCGG-GCUG-------------UCCGGgaCG-----------CCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 141659 0.66 0.514555
Target:  5'- gGCCCcGCGGGCUCguuguggaggcaugUcugccucccacgGCGGCuGGCGGCg -3'
miRNA:   3'- gCGGGcUGUCCGGG--------------A------------CGCCG-UCGCCG- -5'
29369 3' -65 NC_006151.1 + 105256 0.66 0.513631
Target:  5'- uCGCCUggGACgAGGCCUgggaggacuuuggGCGcGCGcGCGGCc -3'
miRNA:   3'- -GCGGG--CUG-UCCGGGa------------CGC-CGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 123745 0.66 0.511785
Target:  5'- uGCCCGcuguggcggucuuugGCgcGGGCCCcgGgGGCAuCGGCc -3'
miRNA:   3'- gCGGGC---------------UG--UCCGGGa-CgCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 109868 0.66 0.510863
Target:  5'- aCGaCCUGACGGcgcucgucccucccGCCCauccuccgccgcgGCGGCAGCaGCa -3'
miRNA:   3'- -GC-GGGCUGUC--------------CGGGa------------CGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 38627 0.66 0.508101
Target:  5'- -cUCCGGCGcGGCCCUccGCGGgGaCGGCc -3'
miRNA:   3'- gcGGGCUGU-CCGGGA--CGCCgUcGCCG- -5'
29369 3' -65 NC_006151.1 + 10645 0.66 0.508101
Target:  5'- gGCgCGGCAuccccGCCCagGCGGCGGgGGa -3'
miRNA:   3'- gCGgGCUGUc----CGGGa-CGCCGUCgCCg -5'
29369 3' -65 NC_006151.1 + 100228 0.66 0.508101
Target:  5'- gGCgCCGu--GGCCgaGCGcGUGGUGGCg -3'
miRNA:   3'- gCG-GGCuguCCGGgaCGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 128943 0.66 0.508101
Target:  5'- aCGCCCGAgCuGGCCUUcaGGUAGCGcCa -3'
miRNA:   3'- -GCGGGCU-GuCCGGGAcgCCGUCGCcG- -5'
29369 3' -65 NC_006151.1 + 81983 0.66 0.507182
Target:  5'- gGCCCGggcuGCAccacggcGGCCaggGCGGCcGCGuGCg -3'
miRNA:   3'- gCGGGC----UGU-------CCGGga-CGCCGuCGC-CG- -5'
29369 3' -65 NC_006151.1 + 49593 0.66 0.498942
Target:  5'- gCGcCCCGGcCAGcGCgCUGcCGGUccuGGCGGUg -3'
miRNA:   3'- -GC-GGGCU-GUC-CGgGAC-GCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 63155 0.66 0.498942
Target:  5'- cCGCgCGACacgcgguacgGGGCCUUGgGGCGcacGgGGCc -3'
miRNA:   3'- -GCGgGCUG----------UCCGGGACgCCGU---CgCCG- -5'
29369 3' -65 NC_006151.1 + 73017 0.66 0.498942
Target:  5'- uGCCgCuGCgAGGCCCaggGauuGGCGGUGGCg -3'
miRNA:   3'- gCGG-GcUG-UCCGGGa--Cg--CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 90245 0.66 0.498942
Target:  5'- gGCUgGcCAGcGCCCagcccGCGGCgaagacGGCGGCg -3'
miRNA:   3'- gCGGgCuGUC-CGGGa----CGCCG------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 10192 0.66 0.498942
Target:  5'- uCGCCgGuCGcGGCgCggGCGGCGGCuGCa -3'
miRNA:   3'- -GCGGgCuGU-CCGgGa-CGCCGUCGcCG- -5'
29369 3' -65 NC_006151.1 + 19377 0.66 0.498942
Target:  5'- gGCCCGugucguuggGCGuGGCCCgccgGaCGGUcagguGCGGCg -3'
miRNA:   3'- gCGGGC---------UGU-CCGGGa---C-GCCGu----CGCCG- -5'
29369 3' -65 NC_006151.1 + 73751 0.66 0.498942
Target:  5'- gGCCCcgagaaaguggGGCacgcaGGGCaCgUGCugGGCGGCGGCg -3'
miRNA:   3'- gCGGG-----------CUG-----UCCG-GgACG--CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 142313 0.66 0.498942
Target:  5'- aGCgCCGuAUggGGGCCC-GCGcGCucGCGGCg -3'
miRNA:   3'- gCG-GGC-UG--UCCGGGaCGC-CGu-CGCCG- -5'
29369 3' -65 NC_006151.1 + 70066 0.66 0.498031
Target:  5'- aCGCCCGAgccguggUAGcGCgUCUGCGcGUgGGCGGCg -3'
miRNA:   3'- -GCGGGCU-------GUC-CG-GGACGC-CG-UCGCCG- -5'
29369 3' -65 NC_006151.1 + 99325 0.66 0.497119
Target:  5'- cCGCCUGACGGacgcgcagcGCgCCgucggcugcacgGCGGUcgucGGCGGCg -3'
miRNA:   3'- -GCGGGCUGUC---------CG-GGa-----------CGCCG----UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.