Results 1 - 20 of 365 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29369 | 3' | -65 | NC_006151.1 | + | 104526 | 0.66 | 0.516405 |
Target: 5'- cCGCCgCGGCuuccccgaguacgAGGCCgaGCuggccgcccugGGCGcGCGGCg -3' miRNA: 3'- -GCGG-GCUG-------------UCCGGgaCG-----------CCGU-CGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 141659 | 0.66 | 0.514555 |
Target: 5'- gGCCCcGCGGGCUCguuguggaggcaugUcugccucccacgGCGGCuGGCGGCg -3' miRNA: 3'- gCGGGcUGUCCGGG--------------A------------CGCCG-UCGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 105256 | 0.66 | 0.513631 |
Target: 5'- uCGCCUggGACgAGGCCUgggaggacuuuggGCGcGCGcGCGGCc -3' miRNA: 3'- -GCGGG--CUG-UCCGGGa------------CGC-CGU-CGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 123745 | 0.66 | 0.511785 |
Target: 5'- uGCCCGcuguggcggucuuugGCgcGGGCCCcgGgGGCAuCGGCc -3' miRNA: 3'- gCGGGC---------------UG--UCCGGGa-CgCCGUcGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 109868 | 0.66 | 0.510863 |
Target: 5'- aCGaCCUGACGGcgcucgucccucccGCCCauccuccgccgcgGCGGCAGCaGCa -3' miRNA: 3'- -GC-GGGCUGUC--------------CGGGa------------CGCCGUCGcCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 128943 | 0.66 | 0.508101 |
Target: 5'- aCGCCCGAgCuGGCCUUcaGGUAGCGcCa -3' miRNA: 3'- -GCGGGCU-GuCCGGGAcgCCGUCGCcG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 100228 | 0.66 | 0.508101 |
Target: 5'- gGCgCCGu--GGCCgaGCGcGUGGUGGCg -3' miRNA: 3'- gCG-GGCuguCCGGgaCGC-CGUCGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 10645 | 0.66 | 0.508101 |
Target: 5'- gGCgCGGCAuccccGCCCagGCGGCGGgGGa -3' miRNA: 3'- gCGgGCUGUc----CGGGa-CGCCGUCgCCg -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 38627 | 0.66 | 0.508101 |
Target: 5'- -cUCCGGCGcGGCCCUccGCGGgGaCGGCc -3' miRNA: 3'- gcGGGCUGU-CCGGGA--CGCCgUcGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 81983 | 0.66 | 0.507182 |
Target: 5'- gGCCCGggcuGCAccacggcGGCCaggGCGGCcGCGuGCg -3' miRNA: 3'- gCGGGC----UGU-------CCGGga-CGCCGuCGC-CG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 142313 | 0.66 | 0.498942 |
Target: 5'- aGCgCCGuAUggGGGCCC-GCGcGCucGCGGCg -3' miRNA: 3'- gCG-GGC-UG--UCCGGGaCGC-CGu-CGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 49593 | 0.66 | 0.498942 |
Target: 5'- gCGcCCCGGcCAGcGCgCUGcCGGUccuGGCGGUg -3' miRNA: 3'- -GC-GGGCU-GUC-CGgGAC-GCCG---UCGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 63155 | 0.66 | 0.498942 |
Target: 5'- cCGCgCGACacgcgguacgGGGCCUUGgGGCGcacGgGGCc -3' miRNA: 3'- -GCGgGCUG----------UCCGGGACgCCGU---CgCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 73017 | 0.66 | 0.498942 |
Target: 5'- uGCCgCuGCgAGGCCCaggGauuGGCGGUGGCg -3' miRNA: 3'- gCGG-GcUG-UCCGGGa--Cg--CCGUCGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 90245 | 0.66 | 0.498942 |
Target: 5'- gGCUgGcCAGcGCCCagcccGCGGCgaagacGGCGGCg -3' miRNA: 3'- gCGGgCuGUC-CGGGa----CGCCG------UCGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 10192 | 0.66 | 0.498942 |
Target: 5'- uCGCCgGuCGcGGCgCggGCGGCGGCuGCa -3' miRNA: 3'- -GCGGgCuGU-CCGgGa-CGCCGUCGcCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 19377 | 0.66 | 0.498942 |
Target: 5'- gGCCCGugucguuggGCGuGGCCCgccgGaCGGUcagguGCGGCg -3' miRNA: 3'- gCGGGC---------UGU-CCGGGa---C-GCCGu----CGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 73751 | 0.66 | 0.498942 |
Target: 5'- gGCCCcgagaaaguggGGCacgcaGGGCaCgUGCugGGCGGCGGCg -3' miRNA: 3'- gCGGG-----------CUG-----UCCG-GgACG--CCGUCGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 70066 | 0.66 | 0.498031 |
Target: 5'- aCGCCCGAgccguggUAGcGCgUCUGCGcGUgGGCGGCg -3' miRNA: 3'- -GCGGGCU-------GUC-CG-GGACGC-CG-UCGCCG- -5' |
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29369 | 3' | -65 | NC_006151.1 | + | 99325 | 0.66 | 0.497119 |
Target: 5'- cCGCCUGACGGacgcgcagcGCgCCgucggcugcacgGCGGUcgucGGCGGCg -3' miRNA: 3'- -GCGGGCUGUC---------CG-GGa-----------CGCCG----UCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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