miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 122652 0.66 0.769565
Target:  5'- aCGACcuggAGCGGCgcgagcgccgcgccgAGguGCGCgCGGCGGCc -3'
miRNA:   3'- -GUUG----UCGUCG---------------UCguCGCG-GUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 59173 0.66 0.765718
Target:  5'- -cGCAGCAGC-GCGGCGaucuCGGCcuuGCGc -3'
miRNA:   3'- guUGUCGUCGuCGUCGCg---GUCGu--CGU- -5'
29369 5' -58.1 NC_006151.1 + 50540 0.66 0.765718
Target:  5'- cCAcCAGCAGCAGCAccaccacCGCUcuCAGCAu -3'
miRNA:   3'- -GUuGUCGUCGUCGUc------GCGGucGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 68859 0.66 0.765718
Target:  5'- gCGAC-GCGucCAGCAGCGCCGG-GGCGc -3'
miRNA:   3'- -GUUGuCGUc-GUCGUCGCGGUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 105684 0.66 0.765718
Target:  5'- -uACGGCGGC-GCGGgGCCGacgccggcGCGGCc -3'
miRNA:   3'- guUGUCGUCGuCGUCgCGGU--------CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 18554 0.66 0.765718
Target:  5'- gAACGGCcGCgaGGCcGC-CCGGCGGCGg -3'
miRNA:   3'- gUUGUCGuCG--UCGuCGcGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 38136 0.66 0.765718
Target:  5'- cCGGCcgAGCGGCGGCAG-GCC-GCGGa- -3'
miRNA:   3'- -GUUG--UCGUCGUCGUCgCGGuCGUCgu -5'
29369 5' -58.1 NC_006151.1 + 106501 0.66 0.765718
Target:  5'- --cCAGCGGCuGGCGcGCGCCGuGCcgGGCGc -3'
miRNA:   3'- guuGUCGUCG-UCGU-CGCGGU-CG--UCGU- -5'
29369 5' -58.1 NC_006151.1 + 116107 0.66 0.765718
Target:  5'- --uCGGCgauGGC-GCGGCGCUugucgGGCAGCAc -3'
miRNA:   3'- guuGUCG---UCGuCGUCGCGG-----UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 133480 0.66 0.765718
Target:  5'- aGGCGGCcGCgggcgucaccuuGGCGGCGCgGGgGGCGc -3'
miRNA:   3'- gUUGUCGuCG------------UCGUCGCGgUCgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 38824 0.66 0.765718
Target:  5'- cCGACGGCGGCuuccGCcGCGucCCGGcCGGCGa -3'
miRNA:   3'- -GUUGUCGUCGu---CGuCGC--GGUC-GUCGU- -5'
29369 5' -58.1 NC_006151.1 + 99953 0.66 0.764753
Target:  5'- uCAGCGGCuaccgcaccaAGCucgccgcgcucguGGCGGCGCUGGCGcGCGa -3'
miRNA:   3'- -GUUGUCG----------UCG-------------UCGUCGCGGUCGU-CGU- -5'
29369 5' -58.1 NC_006151.1 + 105358 0.66 0.756016
Target:  5'- aGACGGCgaccauggAGguGCuGGCGCUGcGCAGCGa -3'
miRNA:   3'- gUUGUCG--------UCguCG-UCGCGGU-CGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 71321 0.66 0.756016
Target:  5'- cCGGCAagcGCGGCGGCuGCGCCGacgaccucgccGUGGCc -3'
miRNA:   3'- -GUUGU---CGUCGUCGuCGCGGU-----------CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 108675 0.66 0.756016
Target:  5'- uCAGCAGCcggAGCGGCGGC-CCG--AGCAc -3'
miRNA:   3'- -GUUGUCG---UCGUCGUCGcGGUcgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 81207 0.66 0.756016
Target:  5'- ---gGGCcGCAGUccgGGCGCCGGC-GCGu -3'
miRNA:   3'- guugUCGuCGUCG---UCGCGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 8679 0.66 0.756016
Target:  5'- cCGACGGUGGUGGCcGgGCgGGCGGUc -3'
miRNA:   3'- -GUUGUCGUCGUCGuCgCGgUCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 64399 0.66 0.756016
Target:  5'- -cGCGGC-GCAGCAGCGuCCA-CAGg- -3'
miRNA:   3'- guUGUCGuCGUCGUCGC-GGUcGUCgu -5'
29369 5' -58.1 NC_006151.1 + 4797 0.66 0.756016
Target:  5'- gCGGC-GCGGUAGCGG-GCC-GCGGCc -3'
miRNA:   3'- -GUUGuCGUCGUCGUCgCGGuCGUCGu -5'
29369 5' -58.1 NC_006151.1 + 130365 0.66 0.746201
Target:  5'- uGACGGCcGCGcgcgccGCGGCGuCCAGC-GCGa -3'
miRNA:   3'- gUUGUCGuCGU------CGUCGC-GGUCGuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.