miRNA display CGI


Results 61 - 80 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 119540 0.74 0.184153
Target:  5'- cCCGCCUGCgcgcacacaacccuGCACCGCcugcGCCaCCGCUCc -3'
miRNA:   3'- cGGUGGACG--------------UGUGGCGc---CGG-GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 119305 0.67 0.452587
Target:  5'- -gCugCUGCACACgGCcucgcagcccgcgacGGCCCCGggCa -3'
miRNA:   3'- cgGugGACGUGUGgCG---------------CCGGGGCgaG- -5'
29370 3' -63.7 NC_006151.1 + 119197 0.67 0.493987
Target:  5'- cGCCGCCgacGCGCGCaaggagggCGcCGGCCCCucGUUUa -3'
miRNA:   3'- -CGGUGGa--CGUGUG--------GC-GCCGGGG--CGAG- -5'
29370 3' -63.7 NC_006151.1 + 119041 0.69 0.366573
Target:  5'- cGCCAaggaCgGCgGCGCCGCGGCCgccuCCGCg- -3'
miRNA:   3'- -CGGUg---GaCG-UGUGGCGCCGG----GGCGag -5'
29370 3' -63.7 NC_006151.1 + 118722 0.72 0.224271
Target:  5'- uGCCGCCUGCuGCACgGCuacgugcugGGCCCgGCg- -3'
miRNA:   3'- -CGGUGGACG-UGUGgCG---------CCGGGgCGag -5'
29370 3' -63.7 NC_006151.1 + 118354 0.71 0.288604
Target:  5'- cGCgCGCCUGCGagGCgGCGcGCgCCCGCUUc -3'
miRNA:   3'- -CG-GUGGACGUg-UGgCGC-CG-GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 117649 0.75 0.154245
Target:  5'- cGCCGCgCUGCuccggggcguccagGCACCGCGGCgcgaugaacuugaaCUCGCUCa -3'
miRNA:   3'- -CGGUG-GACG--------------UGUGGCGCCG--------------GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 117601 0.7 0.315357
Target:  5'- cGCCGCCgcaGUAgACCGUGGgCUCGCg- -3'
miRNA:   3'- -CGGUGGa--CGUgUGGCGCCgGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 117544 0.66 0.540839
Target:  5'- cCCACgCgGCgacGCGCCGCGGCCagaaggGCUCc -3'
miRNA:   3'- cGGUG-GaCG---UGUGGCGCCGGgg----CGAG- -5'
29370 3' -63.7 NC_006151.1 + 117281 0.69 0.382222
Target:  5'- cGCCGCCgacaGCGCGCgCGCGaGCUgcucggCGCUCg -3'
miRNA:   3'- -CGGUGGa---CGUGUG-GCGC-CGGg-----GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 116292 0.7 0.322331
Target:  5'- cGCCGaguCCUGCACGCaguaGCGcccgaugacGCCgCGCUCg -3'
miRNA:   3'- -CGGU---GGACGUGUGg---CGC---------CGGgGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 115756 0.68 0.423236
Target:  5'- gGCCGCCUGCugcuguccaGCAgCaCGGCCUccucgggcgCGCUCg -3'
miRNA:   3'- -CGGUGGACG---------UGUgGcGCCGGG---------GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 115642 0.68 0.406513
Target:  5'- gGCCACCaGCAUGUCGCGGCCgaUGgUCg -3'
miRNA:   3'- -CGGUGGaCGUGUGGCGCCGGg-GCgAG- -5'
29370 3' -63.7 NC_006151.1 + 115190 0.7 0.32942
Target:  5'- cGCUccaGCCaGCGCGCCGCGGgCgCGCg- -3'
miRNA:   3'- -CGG---UGGaCGUGUGGCGCCgGgGCGag -5'
29370 3' -63.7 NC_006151.1 + 114443 0.7 0.301752
Target:  5'- aCCGCCUGCucggggcCugCGcCGGCCaCCGCaUCg -3'
miRNA:   3'- cGGUGGACGu------GugGC-GCCGG-GGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 114127 0.68 0.431751
Target:  5'- cCCACgUGCGcCGCCGcCGaGCCgCgGCUCg -3'
miRNA:   3'- cGGUGgACGU-GUGGC-GC-CGG-GgCGAG- -5'
29370 3' -63.7 NC_006151.1 + 113801 0.71 0.27591
Target:  5'- cGCgCugCUGCgGCGCCaCGGCCUcgCGCUCg -3'
miRNA:   3'- -CG-GugGACG-UGUGGcGCCGGG--GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 113594 0.71 0.269732
Target:  5'- aCCcCCUGUGCGCCGUGGCCgaGCg- -3'
miRNA:   3'- cGGuGGACGUGUGGCGCCGGggCGag -5'
29370 3' -63.7 NC_006151.1 + 113540 0.76 0.122239
Target:  5'- uGgCGCUgaUGCGCGCCGCGGgCCCGCg- -3'
miRNA:   3'- -CgGUGG--ACGUGUGGCGCCgGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 113100 0.69 0.366573
Target:  5'- cGCCACCgggggcgggGCcgcggacgcggACGCCGCcgGGCCCgGCUa -3'
miRNA:   3'- -CGGUGGa--------CG-----------UGUGGCG--CCGGGgCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.