miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 87443 0.76 0.125327
Target:  5'- cCCGCC-GC-CGCCGCGGCcgccCCCGCUCc -3'
miRNA:   3'- cGGUGGaCGuGUGGCGCCG----GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 100573 0.76 0.122239
Target:  5'- gGCCGCCUGCAgGCCGCcaccGUCCUGCg- -3'
miRNA:   3'- -CGGUGGACGUgUGGCGc---CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 50333 0.76 0.125327
Target:  5'- gGCCGCCcgGCGCcugGCCGCGGCcuCCCGC-Cg -3'
miRNA:   3'- -CGGUGGa-CGUG---UGGCGCCG--GGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 113540 0.76 0.122239
Target:  5'- uGgCGCUgaUGCGCGCCGCGGgCCCGCg- -3'
miRNA:   3'- -CgGUGG--ACGUGUGGCGCCgGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 58732 0.76 0.131719
Target:  5'- uGCCGCUcGCgucgcgcaGCGCCGCGGCCaCCGCg- -3'
miRNA:   3'- -CGGUGGaCG--------UGUGGCGCCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 82666 0.75 0.16316
Target:  5'- cCCACCcugcgGCGCGCCGCGGgcgagggcggcggcCCCCGCg- -3'
miRNA:   3'- cGGUGGa----CGUGUGGCGCC--------------GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 117649 0.75 0.154245
Target:  5'- cGCCGCgCUGCuccggggcguccagGCACCGCGGCgcgaugaacuugaaCUCGCUCa -3'
miRNA:   3'- -CGGUG-GACG--------------UGUGGCGCCG--------------GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 48892 0.75 0.149037
Target:  5'- cGCgCGCCUGCGCuggccgaguACCGCGGCCgCUGCc- -3'
miRNA:   3'- -CG-GUGGACGUG---------UGGCGCCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 38264 0.75 0.15274
Target:  5'- cGCC-CCgGCcaACgugGCCGCGGCCCgGCUCg -3'
miRNA:   3'- -CGGuGGaCG--UG---UGGCGCCGGGgCGAG- -5'
29370 3' -63.7 NC_006151.1 + 36680 0.75 0.160399
Target:  5'- cGUCACCaucaccaGCACCGCGaGCCCCuGCUCg -3'
miRNA:   3'- -CGGUGGacg----UGUGGCGC-CGGGG-CGAG- -5'
29370 3' -63.7 NC_006151.1 + 65829 0.75 0.149037
Target:  5'- gGCgGCC-GCGcCAgCGCGGCCCgGCUCa -3'
miRNA:   3'- -CGgUGGaCGU-GUgGCGCCGGGgCGAG- -5'
29370 3' -63.7 NC_006151.1 + 109797 0.75 0.15274
Target:  5'- cCCGCCggaGUuuGCGCCGcCGGCCCCGCg- -3'
miRNA:   3'- cGGUGGa--CG--UGUGGC-GCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 81347 0.75 0.15274
Target:  5'- cGCCGCCgccGCGC-CCGgGGCCCCGg-- -3'
miRNA:   3'- -CGGUGGa--CGUGuGGCgCCGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 141637 0.75 0.145415
Target:  5'- cGCUGCCgcggcgGCGCGgCGgGGCCCCGCg- -3'
miRNA:   3'- -CGGUGGa-----CGUGUgGCgCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 85531 0.75 0.160399
Target:  5'- gGCCugCUGC-UGCUGCGGCgCCUGCUg -3'
miRNA:   3'- -CGGugGACGuGUGGCGCCG-GGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 15238 0.75 0.149037
Target:  5'- gGCCcCCUGCugGCa--GGCCCUGCUCc -3'
miRNA:   3'- -CGGuGGACGugUGgcgCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 135338 0.74 0.17676
Target:  5'- cGCCGCCagGCACGuguCCGCGaGCCgCCGCg- -3'
miRNA:   3'- -CGGUGGa-CGUGU---GGCGC-CGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 131550 0.74 0.18999
Target:  5'- -gCGCCUcGgGCGCCGCacgGGCCCCGCgUCg -3'
miRNA:   3'- cgGUGGA-CgUGUGGCG---CCGGGGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 24959 0.74 0.185486
Target:  5'- cGUgACgaUGCGCGCCGCGGCCugCCGCgUCa -3'
miRNA:   3'- -CGgUGg-ACGUGUGGCGCCGG--GGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 64309 0.74 0.185486
Target:  5'- uGCCGCa-GCGCGCCGUgcuGGCCUCGCa- -3'
miRNA:   3'- -CGGUGgaCGUGUGGCG---CCGGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.