Results 41 - 60 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 3' | -63.7 | NC_006151.1 | + | 135338 | 0.74 | 0.17676 |
Target: 5'- cGCCGCCagGCACGuguCCGCGaGCCgCCGCg- -3' miRNA: 3'- -CGGUGGa-CGUGU---GGCGC-CGG-GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 120870 | 0.74 | 0.185486 |
Target: 5'- aGCCACCUGCuccGCuCCGUcauGGCCUCGCg- -3' miRNA: 3'- -CGGUGGACG---UGuGGCG---CCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 64519 | 0.74 | 0.172536 |
Target: 5'- cGCCGCCaaagGC-CGCCGCGGCCgCGUc- -3' miRNA: 3'- -CGGUGGa---CGuGUGGCGCCGGgGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 64309 | 0.74 | 0.185486 |
Target: 5'- uGCCGCa-GCGCGCCGUgcuGGCCUCGCa- -3' miRNA: 3'- -CGGUGgaCGUGUGGCG---CCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 131550 | 0.74 | 0.18999 |
Target: 5'- -gCGCCUcGgGCGCCGCacgGGCCCCGCgUCg -3' miRNA: 3'- cgGUGGA-CgUGUGGCG---CCGGGGCG-AG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 58787 | 0.73 | 0.210962 |
Target: 5'- cGCCGCCgucacguggacgaaGCGCGCCGCguacgcgccGGCCCCGUc- -3' miRNA: 3'- -CGGUGGa-------------CGUGUGGCG---------CCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 107529 | 0.73 | 0.208976 |
Target: 5'- cCCGCC-GUugGCCccgGCGGCCCCGC-Cg -3' miRNA: 3'- cGGUGGaCGugUGG---CGCCGGGGCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 99677 | 0.73 | 0.208976 |
Target: 5'- cGCUgggGCCUGCGCGCCGaCGGCgCCGg-- -3' miRNA: 3'- -CGG---UGGACGUGUGGC-GCCGgGGCgag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 30562 | 0.73 | 0.199286 |
Target: 5'- cGCCGCaC-GCGCcgucCCGCGGCCCCGUc- -3' miRNA: 3'- -CGGUG-GaCGUGu---GGCGCCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 39775 | 0.73 | 0.19459 |
Target: 5'- cGCCGCCUucggGCAC-CgCGCGGCCaaCCGCUg -3' miRNA: 3'- -CGGUGGA----CGUGuG-GCGCCGG--GGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 38174 | 0.73 | 0.204081 |
Target: 5'- cGUCGCC--CGCACCGUGGCgCCGCUg -3' miRNA: 3'- -CGGUGGacGUGUGGCGCCGgGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 70573 | 0.73 | 0.208976 |
Target: 5'- cGCCGCCacGCGCACCaCGGCCgagcggCUGCUCc -3' miRNA: 3'- -CGGUGGa-CGUGUGGcGCCGG------GGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 99300 | 0.73 | 0.199286 |
Target: 5'- aGCgCGCCgUGCugGaCCGCGcGCCCCGCc- -3' miRNA: 3'- -CG-GUGG-ACGugU-GGCGC-CGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 121835 | 0.73 | 0.19459 |
Target: 5'- cGCUACCU-CGCGCgGCGGCUgCCGCUg -3' miRNA: 3'- -CGGUGGAcGUGUGgCGCCGG-GGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 76893 | 0.73 | 0.213468 |
Target: 5'- cGCCGCCUGCuGCGCCggcgagaGCGGCaUCCGgUCc -3' miRNA: 3'- -CGGUGGACG-UGUGG-------CGCCG-GGGCgAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 39339 | 0.73 | 0.21907 |
Target: 5'- cGCgGCUcgGCGCGgCGCGGCgCCgGCUCa -3' miRNA: 3'- -CGgUGGa-CGUGUgGCGCCG-GGgCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 109653 | 0.72 | 0.229577 |
Target: 5'- aGCCGCCgcUGCcgcCACCGCcGCCCC-CUCa -3' miRNA: 3'- -CGGUGG--ACGu--GUGGCGcCGGGGcGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 84617 | 0.72 | 0.224271 |
Target: 5'- cGCCGCCgcgcgGC-CGCCGCGGCgCUGgaCa -3' miRNA: 3'- -CGGUGGa----CGuGUGGCGCCGgGGCgaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 67988 | 0.72 | 0.224271 |
Target: 5'- gGCgGCCcGCcgGCGCCGCGGCCacggGCUCg -3' miRNA: 3'- -CGgUGGaCG--UGUGGCGCCGGgg--CGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 107618 | 0.72 | 0.224271 |
Target: 5'- cGCCGCCcGCcaaGC-CCGUGGagacgaCCCCGCUCa -3' miRNA: 3'- -CGGUGGaCG---UGuGGCGCC------GGGGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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