Results 61 - 80 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 3' | -63.7 | NC_006151.1 | + | 66870 | 0.72 | 0.246133 |
Target: 5'- gGCgGCgCgaaggGCGCGCC-CGGCCCCGCg- -3' miRNA: 3'- -CGgUG-Ga----CGUGUGGcGCCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 135182 | 0.72 | 0.246133 |
Target: 5'- cGCCGgCUGC-CGCCGCcgGGCCagucccagcguCCGCUCc -3' miRNA: 3'- -CGGUgGACGuGUGGCG--CCGG-----------GGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 39848 | 0.72 | 0.229577 |
Target: 5'- gGCCGCCgggGCcucgccgaGCuCCGCGGCCCCGa-- -3' miRNA: 3'- -CGGUGGa--CG--------UGuGGCGCCGGGGCgag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 118722 | 0.72 | 0.224271 |
Target: 5'- uGCCGCCUGCuGCACgGCuacgugcugGGCCCgGCg- -3' miRNA: 3'- -CGGUGGACG-UGUGgCG---------CCGGGgCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136400 | 0.72 | 0.240507 |
Target: 5'- uGCUGCCUGagcggcUACGCgCGgGGCCCCGCg- -3' miRNA: 3'- -CGGUGGAC------GUGUG-GCgCCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 84617 | 0.72 | 0.224271 |
Target: 5'- cGCCGCCgcgcgGC-CGCCGCGGCgCUGgaCa -3' miRNA: 3'- -CGGUGGa----CGuGUGGCGCCGgGGCgaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 20656 | 0.72 | 0.23995 |
Target: 5'- gGCCGUCaGCACAaagagguCCGUGGUCCCGUUCa -3' miRNA: 3'- -CGGUGGaCGUGU-------GGCGCCGGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 27198 | 0.72 | 0.234989 |
Target: 5'- gGCCGCgCaGaagGCGCCGgGGCCCCGCg- -3' miRNA: 3'- -CGGUG-GaCg--UGUGGCgCCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 86183 | 0.72 | 0.229577 |
Target: 5'- gGCCGCC-GCGCugCccccgGCGGgCCCGCUg -3' miRNA: 3'- -CGGUGGaCGUGugG-----CGCCgGGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 69559 | 0.72 | 0.224271 |
Target: 5'- cGCCACguggCUGCGCACCG-GGUgCCGCg- -3' miRNA: 3'- -CGGUG----GACGUGUGGCgCCGgGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 4121 | 0.72 | 0.229577 |
Target: 5'- cGCgGCCUGC-CGCCGCucggccgggccGGCCCCGgggaUCg -3' miRNA: 3'- -CGgUGGACGuGUGGCG-----------CCGGGGCg---AG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 84790 | 0.72 | 0.240507 |
Target: 5'- cGCCGCCgaggagGCGCccgaggcgACCGCGGCCgCGgaCg -3' miRNA: 3'- -CGGUGGa-----CGUG--------UGGCGCCGGgGCgaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 109653 | 0.72 | 0.229577 |
Target: 5'- aGCCGCCgcUGCcgcCACCGCcGCCCC-CUCa -3' miRNA: 3'- -CGGUGG--ACGu--GUGGCGcCGGGGcGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 136963 | 0.72 | 0.240507 |
Target: 5'- cGCCGCCUGCugGa-GCuGGCCgCCGCg- -3' miRNA: 3'- -CGGUGGACGugUggCG-CCGG-GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 102925 | 0.72 | 0.257712 |
Target: 5'- gGCCGCCgaggagcggcUGCGCGCgcuggaCGCGGCgCCCGC-Cg -3' miRNA: 3'- -CGGUGG----------ACGUGUG------GCGCCG-GGGCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 131118 | 0.72 | 0.240507 |
Target: 5'- gGCCGCg-GCGCgggagGCCGCGGCgCCGCg- -3' miRNA: 3'- -CGGUGgaCGUG-----UGGCGCCGgGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 107618 | 0.72 | 0.224271 |
Target: 5'- cGCCGCCcGCcaaGC-CCGUGGagacgaCCCCGCUCa -3' miRNA: 3'- -CGGUGGaCG---UGuGGCGCC------GGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 85173 | 0.72 | 0.229577 |
Target: 5'- cGCCGC--GgGCGCCGCcGCCCCGCUg -3' miRNA: 3'- -CGGUGgaCgUGUGGCGcCGGGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 103894 | 0.72 | 0.234989 |
Target: 5'- cGCCACCUgGCgcuggaggugGCGCgCGCGGCCgCCGUg- -3' miRNA: 3'- -CGGUGGA-CG----------UGUG-GCGCCGG-GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 37854 | 0.72 | 0.234989 |
Target: 5'- gGCCuACCcggGcCGCGCCGCGGacCCCCGCg- -3' miRNA: 3'- -CGG-UGGa--C-GUGUGGCGCC--GGGGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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