miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 105498 0.65 0.92722
Target:  5'- gUCGaGGAGGACGugcGCGaGCucGACcgcauGGCGGCg -3'
miRNA:   3'- -AGUaCCUCCUGU---CGC-CG--UUG-----UCGUCG- -5'
29370 5' -55 NC_006151.1 + 17115 0.65 0.92722
Target:  5'- ---cGGGGGcucCGGCGGCggUgcugcgggaGGCGGCc -3'
miRNA:   3'- aguaCCUCCu--GUCGCCGuuG---------UCGUCG- -5'
29370 5' -55 NC_006151.1 + 105962 0.65 0.92722
Target:  5'- cUCAUGGA-GACGGCGaccGUGGCgGGCAuGCg -3'
miRNA:   3'- -AGUACCUcCUGUCGC---CGUUG-UCGU-CG- -5'
29370 5' -55 NC_006151.1 + 72605 0.66 0.921684
Target:  5'- ---gGGGGGGCagGGCGGagaCGACGGUccGGCg -3'
miRNA:   3'- aguaCCUCCUG--UCGCC---GUUGUCG--UCG- -5'
29370 5' -55 NC_006151.1 + 89791 0.66 0.921684
Target:  5'- cCAcUGGAGGGaggaGGCGGCcgagaaGACAG-GGCg -3'
miRNA:   3'- aGU-ACCUCCUg---UCGCCG------UUGUCgUCG- -5'
29370 5' -55 NC_006151.1 + 31732 0.66 0.921684
Target:  5'- gCGUGGAGaGGCGcccGCGccggggacGCGccuGCGGCGGCg -3'
miRNA:   3'- aGUACCUC-CUGU---CGC--------CGU---UGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 45167 0.66 0.921684
Target:  5'- -gAUGGAcGGACggGGUGGCGugcccgccaccACGGaCGGCg -3'
miRNA:   3'- agUACCU-CCUG--UCGCCGU-----------UGUC-GUCG- -5'
29370 5' -55 NC_006151.1 + 77023 0.66 0.921684
Target:  5'- cCGUGGAGcGcCAGgacgaGGCAGCAcGCGGg -3'
miRNA:   3'- aGUACCUC-CuGUCg----CCGUUGU-CGUCg -5'
29370 5' -55 NC_006151.1 + 120968 0.66 0.921684
Target:  5'- cCAgGcGGGGAacuggAGCGGgcuCAACGGCGGCa -3'
miRNA:   3'- aGUaC-CUCCUg----UCGCC---GUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 127383 0.66 0.921684
Target:  5'- ---cGGGGG-UGGCGGgGGCcGCGGCc -3'
miRNA:   3'- aguaCCUCCuGUCGCCgUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 108662 0.66 0.915899
Target:  5'- ---cGGAGGuccccccucaGCAGCcGgAGCGGCGGCc -3'
miRNA:   3'- aguaCCUCC----------UGUCGcCgUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 121321 0.66 0.915899
Target:  5'- gCGUGGAGG-CGGCcGCcgAGCuGguGCg -3'
miRNA:   3'- aGUACCUCCuGUCGcCG--UUGuCguCG- -5'
29370 5' -55 NC_006151.1 + 3216 0.66 0.91231
Target:  5'- cUCggGGucGGCuaucugccgcauccaGGCGGCG-CGGCGGCg -3'
miRNA:   3'- -AGuaCCucCUG---------------UCGCCGUuGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 58042 0.66 0.909867
Target:  5'- aCA-GGGGGAagccCAGCGcGCAGUAGUAGUc -3'
miRNA:   3'- aGUaCCUCCU----GUCGC-CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 129493 0.66 0.909867
Target:  5'- ---cGGAGGGCAGCGcgggcGCGAUgacgAGCcGCu -3'
miRNA:   3'- aguaCCUCCUGUCGC-----CGUUG----UCGuCG- -5'
29370 5' -55 NC_006151.1 + 36620 0.66 0.909867
Target:  5'- gCcgGGccGGucuCGGCgcccGGCGGCGGCGGCg -3'
miRNA:   3'- aGuaCCu-CCu--GUCG----CCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 57033 0.66 0.909867
Target:  5'- cCAgGGcAGGAuCAGCGGgGggcGCAGCuGCu -3'
miRNA:   3'- aGUaCC-UCCU-GUCGCCgU---UGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 63466 0.66 0.909867
Target:  5'- ---cGGuucugcucGCAGgGGCGGCGGCGGCg -3'
miRNA:   3'- aguaCCucc-----UGUCgCCGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 64219 0.66 0.909867
Target:  5'- gCGUGGGcGccuCGGCGuacagggccGCGACGGCGGCg -3'
miRNA:   3'- aGUACCUcCu--GUCGC---------CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 33313 0.66 0.909867
Target:  5'- gCGUGGgaccgggaccGGGACAgGgGGCGGgGGCGGg -3'
miRNA:   3'- aGUACC----------UCCUGU-CgCCGUUgUCGUCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.