Results 1 - 20 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29370 | 5' | -55 | NC_006151.1 | + | 17115 | 0.65 | 0.92722 |
Target: 5'- ---cGGGGGcucCGGCGGCggUgcugcgggaGGCGGCc -3' miRNA: 3'- aguaCCUCCu--GUCGCCGuuG---------UCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 105962 | 0.65 | 0.92722 |
Target: 5'- cUCAUGGA-GACGGCGaccGUGGCgGGCAuGCg -3' miRNA: 3'- -AGUACCUcCUGUCGC---CGUUG-UCGU-CG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 105498 | 0.65 | 0.92722 |
Target: 5'- gUCGaGGAGGACGugcGCGaGCucGACcgcauGGCGGCg -3' miRNA: 3'- -AGUaCCUCCUGU---CGC-CG--UUG-----UCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 127383 | 0.66 | 0.921684 |
Target: 5'- ---cGGGGG-UGGCGGgGGCcGCGGCc -3' miRNA: 3'- aguaCCUCCuGUCGCCgUUGuCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 120968 | 0.66 | 0.921684 |
Target: 5'- cCAgGcGGGGAacuggAGCGGgcuCAACGGCGGCa -3' miRNA: 3'- aGUaC-CUCCUg----UCGCC---GUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 77023 | 0.66 | 0.921684 |
Target: 5'- cCGUGGAGcGcCAGgacgaGGCAGCAcGCGGg -3' miRNA: 3'- aGUACCUC-CuGUCg----CCGUUGU-CGUCg -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 45167 | 0.66 | 0.921684 |
Target: 5'- -gAUGGAcGGACggGGUGGCGugcccgccaccACGGaCGGCg -3' miRNA: 3'- agUACCU-CCUG--UCGCCGU-----------UGUC-GUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 31732 | 0.66 | 0.921684 |
Target: 5'- gCGUGGAGaGGCGcccGCGccggggacGCGccuGCGGCGGCg -3' miRNA: 3'- aGUACCUC-CUGU---CGC--------CGU---UGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 89791 | 0.66 | 0.921684 |
Target: 5'- cCAcUGGAGGGaggaGGCGGCcgagaaGACAG-GGCg -3' miRNA: 3'- aGU-ACCUCCUg---UCGCCG------UUGUCgUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 72605 | 0.66 | 0.921684 |
Target: 5'- ---gGGGGGGCagGGCGGagaCGACGGUccGGCg -3' miRNA: 3'- aguaCCUCCUG--UCGCC---GUUGUCG--UCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 121321 | 0.66 | 0.915899 |
Target: 5'- gCGUGGAGG-CGGCcGCcgAGCuGguGCg -3' miRNA: 3'- aGUACCUCCuGUCGcCG--UUGuCguCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 108662 | 0.66 | 0.915899 |
Target: 5'- ---cGGAGGuccccccucaGCAGCcGgAGCGGCGGCc -3' miRNA: 3'- aguaCCUCC----------UGUCGcCgUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 3216 | 0.66 | 0.91231 |
Target: 5'- cUCggGGucGGCuaucugccgcauccaGGCGGCG-CGGCGGCg -3' miRNA: 3'- -AGuaCCucCUG---------------UCGCCGUuGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 118775 | 0.66 | 0.909867 |
Target: 5'- ---cGGAaccuGGAC-GCGGUGGCGcGCGGCg -3' miRNA: 3'- aguaCCU----CCUGuCGCCGUUGU-CGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 64219 | 0.66 | 0.909867 |
Target: 5'- gCGUGGGcGccuCGGCGuacagggccGCGACGGCGGCg -3' miRNA: 3'- aGUACCUcCu--GUCGC---------CGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 63466 | 0.66 | 0.909867 |
Target: 5'- ---cGGuucugcucGCAGgGGCGGCGGCGGCg -3' miRNA: 3'- aguaCCucc-----UGUCgCCGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 57033 | 0.66 | 0.909867 |
Target: 5'- cCAgGGcAGGAuCAGCGGgGggcGCAGCuGCu -3' miRNA: 3'- aGUaCC-UCCU-GUCGCCgU---UGUCGuCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 36620 | 0.66 | 0.909867 |
Target: 5'- gCcgGGccGGucuCGGCgcccGGCGGCGGCGGCg -3' miRNA: 3'- aGuaCCu-CCu--GUCG----CCGUUGUCGUCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 129493 | 0.66 | 0.909867 |
Target: 5'- ---cGGAGGGCAGCGcgggcGCGAUgacgAGCcGCu -3' miRNA: 3'- aguaCCUCCUGUCGC-----CGUUG----UCGuCG- -5' |
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29370 | 5' | -55 | NC_006151.1 | + | 58042 | 0.66 | 0.909867 |
Target: 5'- aCA-GGGGGAagccCAGCGcGCAGUAGUAGUc -3' miRNA: 3'- aGUaCCUCCU----GUCGC-CGUUGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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