miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 120074 0.65 0.646526
Target:  5'- aGgGGCGcaacuuccgcaaccAGUuccagccgGUGCUgCGCCGCCGCGu -3'
miRNA:   3'- gCgCCGC--------------UCG--------CACGA-GCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 85484 0.66 0.63974
Target:  5'- -uCGGCGAggacGCGccGCUgcUGCgCGCCACGGu -3'
miRNA:   3'- gcGCCGCU----CGCa-CGA--GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 133332 0.66 0.63974
Target:  5'- gCGCGcCGGGCGgccgGUUcCGCgGCgGCGGu -3'
miRNA:   3'- -GCGCcGCUCGCa---CGA-GCGgCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 10664 0.66 0.63974
Target:  5'- gGCGGCGGGgGaGCgcggagcgCGCCGCCc--- -3'
miRNA:   3'- gCGCCGCUCgCaCGa-------GCGGCGGugcc -5'
29371 3' -62.9 NC_006151.1 + 35960 0.66 0.63974
Target:  5'- aGCcaGCuccuGGCG-GC-CGCCGCCGCGGc -3'
miRNA:   3'- gCGc-CGc---UCGCaCGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 36565 0.66 0.63974
Target:  5'- aGCGGUG-GCc-GCagCGCCGgCACGGc -3'
miRNA:   3'- gCGCCGCuCGcaCGa-GCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 73385 0.66 0.63974
Target:  5'- gGgGGCGcgcAGCGcgGC-CGCCGCguaCGCGGc -3'
miRNA:   3'- gCgCCGC---UCGCa-CGaGCGGCG---GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 73787 0.66 0.63974
Target:  5'- gGCGGCGGcGCGcacCUCGgCGcCCACGu -3'
miRNA:   3'- gCGCCGCU-CGCac-GAGCgGC-GGUGCc -5'
29371 3' -62.9 NC_006151.1 + 89272 0.66 0.63974
Target:  5'- uCGaCGGCGccGCG-GCgaugGCCGCCGCGu -3'
miRNA:   3'- -GC-GCCGCu-CGCaCGag--CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 95293 0.66 0.63974
Target:  5'- gGCGGCGAcGCGcgcgGCcCGgCGCagCGCGGc -3'
miRNA:   3'- gCGCCGCU-CGCa---CGaGCgGCG--GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 98927 0.66 0.63974
Target:  5'- aCGCuGcGCGAGCa-GUUCGCCGagGCGGc -3'
miRNA:   3'- -GCG-C-CGCUCGcaCGAGCGGCggUGCC- -5'
29371 3' -62.9 NC_006151.1 + 105885 0.66 0.63974
Target:  5'- gCGCGGUcGGCGacaaGCUgGCgGCCAUGc -3'
miRNA:   3'- -GCGCCGcUCGCa---CGAgCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 19739 0.66 0.63974
Target:  5'- gCGCGGCGGuCGUcGCcguugaggUCGCCGUCGaGGu -3'
miRNA:   3'- -GCGCCGCUcGCA-CG--------AGCGGCGGUgCC- -5'
29371 3' -62.9 NC_006151.1 + 54088 0.66 0.63974
Target:  5'- uGCGGCG-GCG-GCg-GCgGCCAUGu -3'
miRNA:   3'- gCGCCGCuCGCaCGagCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 95021 0.66 0.63974
Target:  5'- cCGCGcGCGuAGCGgcugUGCUCGaaGCCGuCGa -3'
miRNA:   3'- -GCGC-CGC-UCGC----ACGAGCggCGGU-GCc -5'
29371 3' -62.9 NC_006151.1 + 58323 0.66 0.637801
Target:  5'- aGCGGCGGcgcgccggccuccGCGUaggcgcgcgcgaaGCUgGuCCGCCGCGu -3'
miRNA:   3'- gCGCCGCU-------------CGCA-------------CGAgC-GGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 53895 0.66 0.631012
Target:  5'- aCGCGGCGAagggcagcuccaGCGccucuauauccaccgGgUUGuCCGCCGCGGc -3'
miRNA:   3'- -GCGCCGCU------------CGCa--------------CgAGC-GGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 115065 0.66 0.630042
Target:  5'- -cCGGgGGGCGgcugaGCUCgGCCGUCAUGa -3'
miRNA:   3'- gcGCCgCUCGCa----CGAG-CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 113288 0.66 0.630042
Target:  5'- cCGCGGCGuacGCGcGCUacCGCgcgguggaCGCCACGc -3'
miRNA:   3'- -GCGCCGCu--CGCaCGA--GCG--------GCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 104783 0.66 0.630042
Target:  5'- aCGCGGagccauGcGCGcGCUCGUgCGCCGCGa -3'
miRNA:   3'- -GCGCCg-----CuCGCaCGAGCG-GCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.