miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 117294 0.74 0.233644
Target:  5'- gCGCGcGCGAGC-UGCUCGgcgcUCGCCACGc -3'
miRNA:   3'- -GCGC-CGCUCGcACGAGC----GGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 101865 0.74 0.233644
Target:  5'- gGCGGCGcaccGCucccGC-CGCCGCCGCGGg -3'
miRNA:   3'- gCGCCGCu---CGca--CGaGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 116206 0.74 0.237978
Target:  5'- gCGCGcGCGAGCGUGauguuggcgaGCCgcGCCACGGc -3'
miRNA:   3'- -GCGC-CGCUCGCACgag-------CGG--CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 57446 0.74 0.241273
Target:  5'- uCGCGGCG-GCccccgcgucggccagGUGCcgCGCCGCgGCGGc -3'
miRNA:   3'- -GCGCCGCuCG---------------CACGa-GCGGCGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 129502 0.73 0.244606
Target:  5'- gCGCGGgcgcgaugaCGAGCc-GCUUGCCGCCgACGGg -3'
miRNA:   3'- -GCGCC---------GCUCGcaCGAGCGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 139657 0.73 0.244606
Target:  5'- uCGCGGCGGGCGcGC-CGCCcgacagGCCcuGCGGc -3'
miRNA:   3'- -GCGCCGCUCGCaCGaGCGG------CGG--UGCC- -5'
29371 3' -62.9 NC_006151.1 + 30893 0.73 0.255992
Target:  5'- gGCGGCGAGCGgaGCgCGCgguagCGCCcGCGGg -3'
miRNA:   3'- gCGCCGCUCGCa-CGaGCG-----GCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 135883 0.73 0.255992
Target:  5'- cCGCGuGCGGccCGUGUucgUCGCCGCCGCGa -3'
miRNA:   3'- -GCGC-CGCUc-GCACG---AGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 129870 0.73 0.255992
Target:  5'- cCGUGGCGucGCGcGC-CGCCGCCACc- -3'
miRNA:   3'- -GCGCCGCu-CGCaCGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 89740 0.73 0.261847
Target:  5'- gGUGGUGGGCGagacgaGCUgGuuGCCGCGGc -3'
miRNA:   3'- gCGCCGCUCGCa-----CGAgCggCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 58226 0.73 0.26781
Target:  5'- gCGCGGgaCGAGCacGCgCGCCGCCACGc -3'
miRNA:   3'- -GCGCC--GCUCGcaCGaGCGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 77947 0.73 0.26781
Target:  5'- gCGCGGCccccacgcuGAGCGUGCgcccgCGCCGgUACGc -3'
miRNA:   3'- -GCGCCG---------CUCGCACGa----GCGGCgGUGCc -5'
29371 3' -62.9 NC_006151.1 + 71686 0.73 0.26781
Target:  5'- cCGCGuGcCGAGCGUG-UCGCCcaGCCGCGa -3'
miRNA:   3'- -GCGC-C-GCUCGCACgAGCGG--CGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 63164 0.73 0.26781
Target:  5'- aCGCGGUacggggccuugGGGCGcacggggccggGCUCGCCGaCCAUGGg -3'
miRNA:   3'- -GCGCCG-----------CUCGCa----------CGAGCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 54121 0.73 0.273881
Target:  5'- gGCGGCGGcuGCGgacggGCUCuGCCccggcggcGCCGCGGa -3'
miRNA:   3'- gCGCCGCU--CGCa----CGAG-CGG--------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 87080 0.73 0.273881
Target:  5'- cCGCcccccGCGAGCGacCUCGCCGCCGUGGu -3'
miRNA:   3'- -GCGc----CGCUCGCacGAGCGGCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 134258 0.72 0.278197
Target:  5'- uCGCGGCGAG-GUGCaggCgauuguagccccggGCCGCCcACGGg -3'
miRNA:   3'- -GCGCCGCUCgCACGa--G--------------CGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 5550 0.72 0.280063
Target:  5'- uCGCGGCG-GCGgGCUCGUCGagcaggggcUCGCGGu -3'
miRNA:   3'- -GCGCCGCuCGCaCGAGCGGC---------GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 128189 0.72 0.280063
Target:  5'- --aGGCGAGCGUGCcgCGCU-CCAUGGc -3'
miRNA:   3'- gcgCCGCUCGCACGa-GCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 122957 0.72 0.280063
Target:  5'- cCGCGGgGGGCGcGgaCGCCGgCgACGGg -3'
miRNA:   3'- -GCGCCgCUCGCaCgaGCGGC-GgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.