Results 1 - 20 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29374 | 3' | -57.2 | NC_006151.1 | + | 137197 | 1.11 | 0.001756 |
Target: 5'- aGCCGCCACGAGGUGUUCAACGCCCGGc -3' miRNA: 3'- -CGGCGGUGCUCCACAAGUUGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 36721 | 0.85 | 0.108965 |
Target: 5'- cGCCGCCGCGAGGcgGcUCGauccucggccgcuugGCGCCCGGa -3' miRNA: 3'- -CGGCGGUGCUCCa-CaAGU---------------UGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 18757 | 0.8 | 0.222531 |
Target: 5'- gGCC-CCACGGGGUGccCGGgGCCCGGg -3' miRNA: 3'- -CGGcGGUGCUCCACaaGUUgCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 120809 | 0.79 | 0.256562 |
Target: 5'- cGCCGCgCGCGAGGUGcUgGACGCgCCGc -3' miRNA: 3'- -CGGCG-GUGCUCCACaAgUUGCG-GGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 107114 | 0.78 | 0.268818 |
Target: 5'- cGCCGCC-CGAGccgccgCGACGCCCGGg -3' miRNA: 3'- -CGGCGGuGCUCcacaa-GUUGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 36614 | 0.78 | 0.288081 |
Target: 5'- cCCGCCGCcGGGccgGUcUCGGCGCCCGGc -3' miRNA: 3'- cGGCGGUGcUCCa--CA-AGUUGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 67833 | 0.77 | 0.294739 |
Target: 5'- cGUCGUCGCGGGG-GcUCAGCaGCCCGGc -3' miRNA: 3'- -CGGCGGUGCUCCaCaAGUUG-CGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 100071 | 0.76 | 0.337197 |
Target: 5'- cGCgGCCGcCGAGGUGcUCGAgGCgCCGGc -3' miRNA: 3'- -CGgCGGU-GCUCCACaAGUUgCG-GGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 54355 | 0.75 | 0.383939 |
Target: 5'- gGCgCGCUACGAGGa---CGugGCCCGGg -3' miRNA: 3'- -CG-GCGGUGCUCCacaaGUugCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 20141 | 0.74 | 0.449883 |
Target: 5'- gGgCGCCGCGGGGgcgGcgCGuggaccgccgggccGCGCCCGGg -3' miRNA: 3'- -CgGCGGUGCUCCa--CaaGU--------------UGCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 55967 | 0.74 | 0.426038 |
Target: 5'- cGCgGCUgguguGCGAGGUGcgCGAggUGCCCGGg -3' miRNA: 3'- -CGgCGG-----UGCUCCACaaGUU--GCGGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 49156 | 0.74 | 0.470763 |
Target: 5'- gGCUGCCugGAGGccUGggCG-CGCCgCGGg -3' miRNA: 3'- -CGGCGGugCUCC--ACaaGUuGCGG-GCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 64475 | 0.73 | 0.527381 |
Target: 5'- cGCCGCCGCGGcGGg----GACGCCCGcGg -3' miRNA: 3'- -CGGCGGUGCU-CCacaagUUGCGGGC-C- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 64627 | 0.73 | 0.517753 |
Target: 5'- cGCCgGCCGCGGGGcg--CGGCGCCCc- -3' miRNA: 3'- -CGG-CGGUGCUCCacaaGUUGCGGGcc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 120112 | 0.72 | 0.566501 |
Target: 5'- cGCCGCCGCGuGGUGgaC-AUGCUcaaCGGg -3' miRNA: 3'- -CGGCGGUGCuCCACaaGuUGCGG---GCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 137312 | 0.72 | 0.576406 |
Target: 5'- uCCGCCGCGcGGUGcUCGacGCGCUCGc -3' miRNA: 3'- cGGCGGUGCuCCACaAGU--UGCGGGCc -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 77219 | 0.72 | 0.537075 |
Target: 5'- cGCCGCCGCGu-GUGU---GCGCCgGGa -3' miRNA: 3'- -CGGCGGUGCucCACAaguUGCGGgCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 98019 | 0.72 | 0.53319 |
Target: 5'- cGCCGgccagguCCGCGGGGUGgcgCAGCGCgagcaccaccagccCCGGg -3' miRNA: 3'- -CGGC-------GGUGCUCCACaa-GUUGCG--------------GGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 5899 | 0.72 | 0.54683 |
Target: 5'- uGCCGCUGCGAGuGcUGccggggUCGGCGgCCGGg -3' miRNA: 3'- -CGGCGGUGCUC-C-ACa-----AGUUGCgGGCC- -5' |
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29374 | 3' | -57.2 | NC_006151.1 | + | 115678 | 0.72 | 0.556641 |
Target: 5'- gGCCGCCACGGGGaggcaggGgagCAgcccguuggccACGCCCGu -3' miRNA: 3'- -CGGCGGUGCUCCa------Caa-GU-----------UGCGGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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