miRNA display CGI


Results 61 - 80 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 125243 0.67 0.425498
Target:  5'- -gGCG-CUC-CCCCGGCCcggcgGGGaCGCc -3'
miRNA:   3'- cgCGCgGAGcGGGGCCGGua---CCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 125183 0.72 0.213592
Target:  5'- -aGCGCCUCgGCCucgCCGGCguCGUGGGCcccGCg -3'
miRNA:   3'- cgCGCGGAG-CGG---GGCCG--GUACCCG---CG- -5'
29375 5' -65.6 NC_006151.1 + 124910 0.66 0.503975
Target:  5'- cGCGCGacggcuCCUuccgcuucaCGUCgCgGGCCcUGGGCGCc -3'
miRNA:   3'- -CGCGC------GGA---------GCGG-GgCCGGuACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 124853 0.69 0.340216
Target:  5'- gGCGCGUg-UGCagCCUGGCCAaGuGGCGCg -3'
miRNA:   3'- -CGCGCGgaGCG--GGGCCGGUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 123927 0.68 0.36521
Target:  5'- cGCGgGCC--GCCUCGGCCucgccgacgcccgggAcGGGCGCc -3'
miRNA:   3'- -CGCgCGGagCGGGGCCGG---------------UaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 123886 0.75 0.136086
Target:  5'- gGCGCucGCCgcgGCCCC-GCCGUGcGGCGCg -3'
miRNA:   3'- -CGCG--CGGag-CGGGGcCGGUAC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 123010 0.71 0.250601
Target:  5'- gGCGCGCCccCGCCggcggacgCCGuGgCGUGGGCGg -3'
miRNA:   3'- -CGCGCGGa-GCGG--------GGC-CgGUACCCGCg -5'
29375 5' -65.6 NC_006151.1 + 122794 0.72 0.213592
Target:  5'- uGCGCgGCCUCGCCCgacgaGcGCCucgaGGCGCu -3'
miRNA:   3'- -CGCG-CGGAGCGGGg----C-CGGuac-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 122674 0.69 0.326102
Target:  5'- cCGCGCCgaggugCGCgCggCGGCCGUGGagcucGCGCu -3'
miRNA:   3'- cGCGCGGa-----GCGgG--GCCGGUACC-----CGCG- -5'
29375 5' -65.6 NC_006151.1 + 122399 0.69 0.340216
Target:  5'- cGCGCGCUggcggCGCUCgCcGCCGUGGaCGCc -3'
miRNA:   3'- -CGCGCGGa----GCGGG-GcCGGUACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 122014 0.69 0.326102
Target:  5'- cGCGCGCgUCGCgCUCGaCaCGUacggcGGGCGCg -3'
miRNA:   3'- -CGCGCGgAGCG-GGGCcG-GUA-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 121770 0.67 0.425498
Target:  5'- -aGCGCUgCGaCCCC-GCgGUGGuGCGCg -3'
miRNA:   3'- cgCGCGGaGC-GGGGcCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 121684 0.69 0.305756
Target:  5'- aGCGgGCCga--CCCGGCCAUGGcGgaGCg -3'
miRNA:   3'- -CGCgCGGagcgGGGCCGGUACC-Cg-CG- -5'
29375 5' -65.6 NC_006151.1 + 121477 0.72 0.206778
Target:  5'- -aGCGCC-CGCCCCcggaGGacgaccuguuugaCAUGGGCGCc -3'
miRNA:   3'- cgCGCGGaGCGGGG----CCg------------GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 121430 0.7 0.262105
Target:  5'- cGCGgGgCUCGCgCCGGCCucgcuGGUGCc -3'
miRNA:   3'- -CGCgCgGAGCGgGGCCGGuac--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 121345 0.72 0.203915
Target:  5'- uGCGCGaCCUCGag--GGCCAgacGGGCGCg -3'
miRNA:   3'- -CGCGC-GGAGCggggCCGGUa--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 120886 0.69 0.3395
Target:  5'- cCGUcaugGCCUCGCgCCCgcugguggugcugGGCC-UGGGCGUc -3'
miRNA:   3'- cGCG----CGGAGCG-GGG-------------CCGGuACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 120737 0.75 0.136086
Target:  5'- -aGCGCC-CGCgggaCCCGGCCGcgucauggccUGGGUGCg -3'
miRNA:   3'- cgCGCGGaGCG----GGGCCGGU----------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 120341 0.73 0.168935
Target:  5'- cGCGCGCC-CGCguggCCgGGCuCGcGGGCGCc -3'
miRNA:   3'- -CGCGCGGaGCG----GGgCCG-GUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 119584 0.68 0.354766
Target:  5'- cCGCGCUucggcgCGCCgaCGGagccCCAUGGGCGUc -3'
miRNA:   3'- cGCGCGGa-----GCGGg-GCC----GGUACCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.